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ONTOLOGY REPORT - ANNOTATIONS


Term:2'-deoxyribonucleotide metabolic process
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Accession:GO:0009394 term browser browse the term
Definition:The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide metabolism


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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063
JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 IEA Ensembl GO_REF:0000107 NCBI chr12:66,381,215...66,508,559
Ensembl chr12:66,389,190...66,500,273
JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase ISO (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr25:11,682,304...11,693,143
Ensembl chr25:11,581,206...11,692,284
JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase IEA Ensembl GO_REF:0000107 NCBI chr 4:24,540,626...25,047,032
Ensembl chr 4:24,540,659...25,046,464
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase IEA Ensembl GO_REF:0000107 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G NUDT1 nudix hydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:14,874,459...14,881,517
Ensembl chr 6:14,859,518...14,882,704
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr24:25,623,997...25,676,336
Ensembl chr24:25,626,134...25,680,902
JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK2 adenylate kinase 2 ISO RGD PMID:5010295 RGD:5490216 NCBI chr 2:68,342,769...68,371,769
Ensembl chr 2:68,350,057...68,371,090
JBrowse link
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
G LOC480491 GTP:AMP phosphotransferase AK3, mitochondrial ISO RGD PMID:5010295 RGD:5490216 NCBI chr 9:10,282,452...10,283,479 JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:17573462 RGD:2305953 NCBI chr28:14,376,824...14,405,409
Ensembl chr28:14,373,452...14,404,541
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:17,679,681...17,683,644
Ensembl chr 6:17,679,722...17,683,570
JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063
JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:66,381,215...66,508,559
Ensembl chr12:66,389,190...66,500,273
JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr25:11,682,304...11,693,143
Ensembl chr25:11,581,206...11,692,284
JBrowse link
G XDH xanthine dehydrogenase ISO (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chr17:24,900,708...24,960,748
Ensembl chr17:24,901,447...24,971,935
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT1 nudix hydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:14,874,459...14,881,517
Ensembl chr 6:14,859,518...14,882,704
JBrowse link
G NUDT15 nudix hydrolase 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:3,416,702...3,424,607
Ensembl chr22:3,416,578...3,424,409
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:25,623,997...25,676,336
Ensembl chr24:25,626,134...25,680,902
JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGUOK deoxyguanosine kinase ISO (MGI:49028|PMID:1664183), (MGI:69194|PMID:7918681) MGI PMID:1664183, PMID:7918681 MGI:49028, MGI:69194 NCBI chr17:49,107,085...49,139,366
Ensembl chr17:49,104,546...49,168,782
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chr23:28,498,730...28,500,998
Ensembl chr23:28,498,652...28,499,998
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G TYMS thymidylate synthetase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
G TBPL1 TATA-box binding protein like 1 ISO (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chr 1:26,898,344...26,938,452
Ensembl chr 1:26,899,859...26,936,995
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr 6:17,679,681...17,683,644
Ensembl chr 6:17,679,722...17,683,570
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
G DTYMK deoxythymidylate kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr 5:42,080,654...42,117,919
Ensembl chr 5:42,080,645...42,117,741
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:42,080,654...42,117,919
Ensembl chr 5:42,080,645...42,117,741
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    metabolic process 10657
      organic substance metabolic process 10132
        carbohydrate derivative metabolic process 965
          deoxyribonucleotide metabolic process 32
            2'-deoxyribonucleotide metabolic process 26
              2'-deoxyribonucleotide biosynthetic process + 10
              purine deoxyribonucleotide metabolic process + 16
              pyrimidine deoxyribonucleotide metabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 16190
    metabolic process 10657
      cellular metabolic process 9645
        heterocycle metabolic process 5034
          nucleobase-containing compound metabolic process 4916
            nucleobase-containing small molecule metabolic process 540
              nucleoside phosphate metabolic process 466
                nucleotide metabolic process 459
                  deoxyribonucleotide metabolic process 32
                    2'-deoxyribonucleotide metabolic process 26
                      2'-deoxyribonucleotide biosynthetic process + 10
                      purine deoxyribonucleotide metabolic process + 16
                      pyrimidine deoxyribonucleotide metabolic process + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.