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ONTOLOGY REPORT - ANNOTATIONS


Term:2'-deoxyribonucleotide metabolic process
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Accession:GO:0009394 term browser browse the term
Definition:The chemical reactions and pathways involving a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide metabolism


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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chr 8:21,351,840...21,356,915
Ensembl chr 8:18,293,555...18,297,078
JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chr 6:107,296,088...107,495,623
Ensembl chr 6:111,344,834...111,539,932
JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase ISO (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chr20:40,950,238...40,982,481
Ensembl chr20:42,044,613...42,076,868
JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr13:9,259,104...9,270,066 JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADK adenosine kinase ISO (MGI:3620422|PMID:12163459) MGI PMID:12163459 MGI:3620422 NCBI chr10:70,672,967...71,236,950
Ensembl chr10:73,342,900...73,902,490
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase ISO (MGI:74163|PMID:7670465)
(MGI:72798|PMID:7731963)
(MGI:76875|PMID:7592575)
(MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964)
MGI PMID:7592575, PMID:7670465, PMID:7731963, PMID:9478961, PMID:14607964 MGI:2155238, MGI:3619310, MGI:72798, MGI:74163, MGI:76875 NCBI chr20:40,950,238...40,982,481
Ensembl chr20:42,044,613...42,076,868
JBrowse link
G NUDT1 nudix hydrolase 1 ISO (PMID:10373420) UniProtKB PMID:10373420 NCBI chr 7:2,511,573...2,520,643
Ensembl chr 7:2,614,005...2,621,997
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:24141705)
(MGI:5828027|PMID:27920203)
UniProtKB
MGI
PMID:24141705, PMID:27920203 MGI:5828027 NCBI chr20:33,224,200...33,282,018
Ensembl chr20:34,341,367...34,398,314
JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK2 adenylate kinase 2 ISO RGD PMID:5010295 RGD:5490216 NCBI chr 1:32,295,668...32,323,681
Ensembl chr 1:33,480,947...33,508,621
JBrowse link
G AK3 adenylate kinase 3 ISO RGD PMID:5010295 RGD:5490216 NCBI chr 9:4,541,984...4,576,341
Ensembl chr 9:4,732,847...4,762,900
JBrowse link
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr 1:203,541,866...203,550,827 JBrowse link
G OGA O-GlcNAcase ISO RGD PMID:17573462 RGD:2305953 NCBI chr10:98,387,144...98,421,105
Ensembl chr10:101,858,879...101,892,479
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 1:46,642,602...46,673,568 JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr16:24,538,023...24,545,426
Ensembl chr16:30,794,268...30,802,179
JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO (PMID:31201273) UniProt
RGD
PMID:4307347, PMID:31201273 RGD:5147877 NCBI chr 1:203,541,866...203,550,827 JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chr 8:21,351,840...21,356,915
Ensembl chr 8:18,293,555...18,297,078
JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK9 adenylate kinase 9 ISO (PMID:23416111) UniProtKB PMID:23416111 NCBI chr 6:107,296,088...107,495,623
Ensembl chr 6:111,344,834...111,539,932
JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr17:69,077,021...69,078,998 JBrowse link
G URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) MGI PMID:16462750 MGI:3665448 NCBI chr13:9,259,104...9,270,066 JBrowse link
G XDH xanthine dehydrogenase ISO (MGI:6306257|PMID:30936145) MGI PMID:30936145 MGI:6306257 NCBI chr2A:31,356,011...31,435,111
Ensembl chr2A:31,425,183...31,504,455
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr 1:203,541,866...203,550,827 JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT1 nudix hydrolase 1 ISO (PMID:10373420), (PMID:22556419)
(MGI:77076|PMID:7592783)
UniProtKB
MGI
PMID:7592783, PMID:10373420, PMID:22556419 MGI:77076 NCBI chr 7:2,511,573...2,520,643
Ensembl chr 7:2,614,005...2,621,997
JBrowse link
G NUDT15 nudix hydrolase 15 ISO (PMID:22556419) UniProtKB PMID:22556419 NCBI chr13:29,189,459...29,198,825
Ensembl chr13:47,891,557...47,900,971
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ISO (PMID:24217394) UniProtKB PMID:24217394 NCBI chr20:33,224,200...33,282,018
Ensembl chr20:34,341,367...34,398,314
JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGUOK deoxyguanosine kinase ISO (MGI:49028|PMID:1664183), (MGI:69194|PMID:7918681) MGI PMID:1664183, PMID:7918681 MGI:49028, MGI:69194 NCBI chr2A:74,000,969...74,032,993
Ensembl chr2A:75,510,768...75,542,563
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chr 3:128,466,119...128,473,186
Ensembl chr 3:135,788,354...135,790,038
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr2A:6,856,242...6,874,567 JBrowse link
G DTYMK deoxythymidylate kinase ISO (MGI:77260|PMID:8845311) RGD
MGI
PMID:220041, PMID:8845311 MGI:77260, RGD:5133687 NCBI chr2B:128,952,009...128,963,640
Ensembl chr2B:247,740,881...247,752,504
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G TYMS thymidylate synthetase ISO (PMID:11278511), (PMID:15093541), (PMID:8845352) CAFA
RGD
PMID:8845352, PMID:9894005, PMID:11278511, PMID:15093541 RGD:1545055 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTYMK deoxythymidylate kinase ISO RGD PMID:220041 RGD:5133687 NCBI chr2B:128,952,009...128,963,640
Ensembl chr2B:247,740,881...247,752,504
JBrowse link
G TBPL1 TATA-box binding protein like 1 ISO (MGI:2159505|PMID:11861477) MGI PMID:11861477 MGI:2159505 NCBI chr 6:131,719,606...131,754,960
Ensembl chr 6:135,817,613...135,852,876
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) UniProtKB PMID:24467396 NCBI chr16:24,538,023...24,545,426
Ensembl chr16:30,794,268...30,802,179
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr2A:6,856,242...6,874,567 JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5M 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr17:33,948,270...33,991,485 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase ISO RGD PMID:1315924, PMID:3032103 RGD:2300191, RGD:2301218 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic ISO (PMID:10681516) UniProtKB PMID:10681516 NCBI chr17:69,077,021...69,078,998 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    metabolic process 7977
      organic substance metabolic process 7668
        carbohydrate derivative metabolic process 723
          deoxyribonucleotide metabolic process 29
            2'-deoxyribonucleotide metabolic process 25
              2'-deoxyribonucleotide biosynthetic process + 9
              purine deoxyribonucleotide metabolic process + 16
              pyrimidine deoxyribonucleotide metabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 12566
    metabolic process 7977
      cellular metabolic process 7331
        heterocycle metabolic process 3801
          nucleobase-containing compound metabolic process 3702
            nucleobase-containing small molecule metabolic process 377
              nucleoside phosphate metabolic process 329
                nucleotide metabolic process 319
                  deoxyribonucleotide metabolic process 29
                    2'-deoxyribonucleotide metabolic process 25
                      2'-deoxyribonucleotide biosynthetic process + 9
                      purine deoxyribonucleotide metabolic process + 16
                      pyrimidine deoxyribonucleotide metabolic process + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.