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ONTOLOGY REPORT - ANNOTATIONS

Term:oligosaccharide biosynthetic process
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Accession:GO:0009312 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide anabolism;   oligosaccharide biosynthesis;   oligosaccharide formation;   oligosaccharide synthesis


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oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (PMID:11278752) MGI PMID:11278752 NCBI chr 9:133,250,401...133,275,201
Ensembl chr 9:133,233,278...133,276,024 		JBrowse link
G B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9417047) Ensembl
MGI		 PMID:9417047 GO_REF:0000107 NCBI chr 3:161,083,883...161,105,349
Ensembl chr 3:161,083,883...161,105,411 		JBrowse link
G B3GALT1 beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 TAS
ISO
IDA
IEA		 (PMID:9417047)
(PMID:9582303)		 Reactome
MGI
UniProt
Ensembl		 PMID:9417047 PMID:9582303 GO_REF:0000107 Reactome:R-HSA-9037629 NCBI chr 2:167,293,001...167,874,045
Ensembl chr 2:167,293,001...167,874,045 		JBrowse link
G B3GALT2 beta-1,3-galactosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
TAS		 (PMID:9417047) Ensembl
MGI
Reactome		 PMID:9417047 GO_REF:0000107 Reactome:R-HSA-9037629 NCBI chr 1:193,178,730...193,186,613
Ensembl chr 1:193,178,730...193,186,613 		JBrowse link
G B3GALT4 beta-1,3-galactosyltransferase 4 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr 6:33,277,123...33,278,825
Ensembl chr 6:33,277,123...33,284,832 		JBrowse link
G B3GALT5 beta-1,3-galactosyltransferase 5 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr21:39,612,940...39,673,137
Ensembl chr21:39,556,442...39,673,137 		JBrowse link
G B4GALNT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group) involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr17:49,120,344...49,176,840
Ensembl chr17:49,132,460...49,176,840 		JBrowse link
G B4GALT1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 NAS
ISO
IDA
IEA		 (PMID:7540104)
(PMID:9813328)
(PMID:2120039)		 UniProt
MGI
Ensembl		 PMID:2120039 PMID:7540104 PMID:9813328 GO_REF:0000107 NCBI chr 9:33,104,077...33,185,089
Ensembl chr 9:33,104,082...33,167,356 		JBrowse link
G FUT1 fucosyltransferase 1 (H blood group) involved_in TAS
IEA		 Reactome
Ensembl		 GO_REF:0000107 Reactome:R-HSA-9033807 NCBI chr19:48,748,011...48,755,358
Ensembl chr19:48,748,011...48,755,390 		JBrowse link
G FUT10 fucosyltransferase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:33,308,061...33,473,146
Ensembl chr 8:33,370,824...33,473,146 		JBrowse link
G FUT2 fucosyltransferase 2 (H blood group) involved_in TAS
IEA		 Reactome
Ensembl		 GO_REF:0000107 Reactome:R-HSA-9033807 Reactome:R-HSA-9037629 NCBI chr19:48,695,971...48,705,951
Ensembl chr19:48,695,971...48,705,951 		JBrowse link
G FUT3 fucosyltransferase 3 (Lewis blood group) involved_in TAS
IDA		 (PMID:1977660) Reactome
BHF-UCL		 PMID:1977660 Reactome:R-HSA-9037629 NCBI chr19:5,842,888...5,857,122
Ensembl chr19:5,842,888...5,851,471 		JBrowse link
G FUT4 fucosyltransferase 4 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr11:94,543,921...94,549,895
Ensembl chr11:94,543,921...94,549,895 		JBrowse link
G FUT5 fucosyltransferase 5 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr19:5,865,826...5,870,540
Ensembl chr19:5,865,826...5,870,540 		JBrowse link
G FUT6 fucosyltransferase 6 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr19:5,830,408...5,839,702
Ensembl chr19:5,830,408...5,839,722 		JBrowse link
G FUT7 fucosyltransferase 7 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr 9:137,030,174...137,032,088
Ensembl chr 9:137,030,174...137,032,088 		JBrowse link
G FUT8 fucosyltransferase 8 involved_in TAS (PMID:9133635) PINC PMID:9133635 NCBI chr14:65,356,842...65,744,121
Ensembl chr14:65,410,592...65,744,121 		JBrowse link
G FUT9 fucosyltransferase 9 involved_in TAS
IEA		 Reactome
Ensembl		 GO_REF:0000107 Reactome:R-HSA-9037629 NCBI chr 6:96,015,974...96,215,612
Ensembl chr 6:96,015,974...96,215,612 		JBrowse link
G MGAT2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr14:49,620,799...49,623,481
Ensembl chr14:49,620,799...49,623,481 		JBrowse link
G MPDU1 mannose-P-dolichol utilization defect 1 involved_in IDA
IBA
IEA
IGI		 (PMID:11179430)
(PMID:11733564)		 UniProt
GO_Central
TreeGrafter		 PMID:11179430 PMID:11733564 GO_REF:0000033 GO_REF:0000118 NCBI chr17:7,583,647...7,588,212
Ensembl chr17:7,583,529...7,592,789 		JBrowse link
G SEC1P secretory blood group 1, pseudogene involved_in ISO (PMID:11323419) MGI PMID:11323419 NCBI chr19:48,638,039...48,682,245
Ensembl chr19:48,638,071...48,682,245
Ensembl chr19:48,638,071...48,682,245 		JBrowse link
G ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IDA (PMID:9266697) BHF-UCL PMID:9266697 NCBI chr16:70,375,977...70,439,100
Ensembl chr16:70,375,977...70,439,237 		JBrowse link
G ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr 1:43,707,536...43,931,159
Ensembl chr 1:43,705,824...43,931,165 		JBrowse link
G ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in TAS
IDA		 (PMID:8288606) Reactome
BHF-UCL		 PMID:8288606 Reactome:R-HSA-9037629 NCBI chr11:126,355,686...126,414,638
Ensembl chr11:126,355,640...126,440,344 		JBrowse link
G ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 involved_in TAS Reactome Reactome:R-HSA-9037629 NCBI chr 3:98,732,262...98,795,852
Ensembl chr 3:98,732,236...98,821,201 		JBrowse link
G ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:10788794) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:10788794 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:76,617,407...76,643,757
Ensembl chr17:76,624,761...76,643,786 		JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISS (PMID:12668675) BHF-UCL PMID:12668675 NCBI chr 1:76,867,480...77,067,546
Ensembl chr 1:76,867,480...77,067,546 		JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISS
IEA
TAS		 (PMID:12668675) BHF-UCL
Ensembl
Reactome		 PMID:12668675 GO_REF:0000107 Reactome:R-HSA-9037629 NCBI chr 9:127,885,321...127,906,616
Ensembl chr 9:127,885,321...127,905,408 		JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4GALT1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 TAS
ISO
IEA		 (PMID:9155011) Reactome
MGI
Ensembl		 PMID:9155011 GO_REF:0000107 Reactome:R-HSA-5653890 NCBI chr 9:33,104,077...33,185,089
Ensembl chr 9:33,104,082...33,167,356 		JBrowse link
G LALBA lactalbumin alpha involved_in IEA
TAS		 (PMID:7708733) InterPro
Ensembl
PINC
UniProt		 PMID:7708733 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr12:48,567,684...48,571,845
Ensembl chr12:48,567,684...48,570,066 		JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBP1 fructose-bisphosphatase 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:94,603,133...94,640,263
Ensembl chr 9:94,603,133...94,640,249 		JBrowse link
G FBP2 fructose-bisphosphatase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:94,558,720...94,593,824
Ensembl chr 9:94,558,720...94,593,824 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    metabolic process 12464
      primary metabolic process 10695
        carbohydrate metabolic process 658
          oligosaccharide metabolic process 75
            oligosaccharide biosynthetic process 31
              6-alpha-maltosylglucose biosynthetic process 0
              disaccharide biosynthetic process + 4
              lipopolysaccharide core region biosynthetic process 0
              raffinose family oligosaccharide biosynthetic process + 0
paths to the root