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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide metabolic process
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Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690



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oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07013843.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Fut4 fucosyltransferase 4 involved_in ISO
ISS
IEA
(PMID:1740457)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:1740457 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:11,586,721...11,590,682
Ensembl chr 8:11,586,721...11,590,682
JBrowse link
G Gla galactosidase, alpha involved_in IBA
ISO
PMID:21873635
(PMID:39940)
RGD PMID:39940 PMID:21873635 RGD:13792537 NCBI chr  X:97,769,227...97,780,646
Ensembl chr  X:97,768,996...97,780,664
JBrowse link
G Mogs mannosyl-oligosaccharide glucosidase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:115,621,623...115,625,026
Ensembl chr 4:115,621,623...115,625,032
JBrowse link
G Naga alpha-N-acetylgalactosaminidase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,846,358...113,855,430
Ensembl chr 7:113,846,374...113,855,315
JBrowse link
G St3gal6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 involved_in ISO
IEA
ISS
(PMID:10206952)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10206952 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,061,282...42,121,801
Ensembl chr11:42,077,621...42,121,776
JBrowse link
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in ISO
ISS
(PMID:12235148)
GO_REF:0000024
RGD
UniProt
PMID:12235148 GO_REF:0000024 NCBI chr 9:9,181,744...9,274,161
Ensembl chr 9:9,182,399...9,269,697
JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:242,129,755...242,645,120
Ensembl chr 2:242,129,763...242,645,133
JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:15,872,230...15,885,250
Ensembl chr 3:15,872,532...15,885,243
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:15,894,278...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
G St8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:175,782,989...175,921,338
Ensembl chr 4:175,789,947...175,920,708
JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO
IBA
(PMID:10766765)
PMID:21873635
RGD PMID:10766765 PMID:21873635 RGD:13792537 NCBI chr 1:127,766,669...127,838,017
Ensembl chr 1:127,762,573...127,838,091
JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IBA
ISO
PMID:21873635
(PMID:10766765)
RGD PMID:10766765 PMID:21873635 RGD:13792537 NCBI chr18:57,754,349...57,760,839
Ensembl chr18:57,754,347...57,760,839
JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO
IBA
(PMID:10766765)
PMID:21873635
RGD PMID:10766765 PMID:21873635 RGD:13792537 NCBI chr 9:95,994,150...96,084,617
Ensembl chr 9:95,993,503...96,084,653
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IBA
ISO
PMID:21873635
(MGI:2182536|PMID:11980897)
RGD PMID:11980897 PMID:21873635 MGI:2182536, RGD:13792537 NCBI chr17:76,740,755...76,883,766
Ensembl chr17:76,745,224...76,884,299
JBrowse link
cellular oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba3 glucosylceramidase beta 3 involved_in ISO (PMID:26193330) RGD PMID:26193330 NCBI chr14:60,575,368...60,662,952
Ensembl chr14:60,574,976...60,721,653
JBrowse link
G Neu2 neuraminidase 2 involved_in ISO
IEA
(PMID:26193330)
GO_REF:0000107
RGD
Ensembl
PMID:26193330 GO_REF:0000107 NCBI chr 9:88,218,494...88,267,356
Ensembl chr 9:88,249,135...88,267,355
JBrowse link
cellular oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase IMP biosynthesis RGD PMID:12799344 RGD:2315736 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2450889 (MGI:87365|PMID:9155011)
Ensembl
RGD
PMID:9155011 GO_REF:0000107 MGI:87365 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Lalba lactalbumin, alpha involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:129,625,752...129,628,022
Ensembl chr 7:129,625,535...129,628,061
JBrowse link
maltose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgam maltase-glucoamylase involved_in ISO (PMID:18036614), (PMID:22058037), (PMID:27480812) RGD PMID:18036614 PMID:22058037 PMID:27480812 NCBI chr 4:69,624,024...69,715,782
Ensembl chr 4:69,446,150...69,692,715
JBrowse link
maltose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr 2:153,847,297...153,877,371
Ensembl chr 2:153,846,474...153,877,332
JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:9582303)
(MGI:1101659|PMID:9417047)
RGD PMID:9417047 PMID:9582303 MGI:1101659 NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419
JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
TAS
ISO
(MGI:1290117|PMID:9813328)
(PMID:2120039)
RGD PMID:2120039 PMID:9813328 PMID:12098497 MGI:1290117, RGD:1302270 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
RGD PMID:11179430 PMID:11733564 PMID:21873635 RGD:13792537 NCBI chr10:54,374,719...54,380,301
Ensembl chr10:54,374,725...54,380,447
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA
(PMID:9266697)
GO_REF:0000107
RGD
Ensembl
PMID:9266697 GO_REF:0000107 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:33,415,666...33,465,365
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within ISO (MGI:2153262|PMID:10788794) RGD PMID:10788794 MGI:2153262 NCBI chr10:101,972,656...101,983,053
Ensembl chr10:101,972,668...101,983,053
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 3:15,894,278...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctbs chitobiase IDA RGD PMID:2751306 RGD:2301430 NCBI chr 2:235,340,520...235,355,091
Ensembl chr 2:235,340,547...235,355,091
JBrowse link
G Gm2a GM2 ganglioside activator acts_upstream_of_or_within ISO MGI:1861930 (MGI:1203907|PMID:9584189) RGD PMID:9584189 MGI:1203907 NCBI chr10:39,219,221...39,231,756
Ensembl chr10:39,219,243...39,231,757
JBrowse link
G Hexb hexosaminidase subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857438 (MGI:1331265|PMID:10021458), (MGI:3573807|PMID:15748167)
Ensembl
RGD
PMID:10021458 PMID:15748167 GO_REF:0000107 MGI:1331265 MGI:3573807 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:57,537,879...57,549,691
Ensembl chr 8:57,537,321...57,549,690
JBrowse link
G Neu1 neuraminidase 1 involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:8985184)
Ensembl
UniProt
RGD
PMID:8985184 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr20:3,897,480...3,901,745
Ensembl chr20:3,897,480...3,901,745
JBrowse link
G Neu2 neuraminidase 2 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:1354405|PMID:10713120)
GO_REF:0000024
(PMID:14613940), (PMID:22228546)
RGD
UniProt
PMID:10713120 PMID:14613940 PMID:22228546 PMID:21873635 GO_REF:0000024 MGI:1354405, RGD:13792537 NCBI chr 9:88,218,494...88,267,356
Ensembl chr 9:88,249,135...88,267,355
JBrowse link
G Neu3 neuraminidase 3 involved_in IBA
ISO
PMID:21873635
(PMID:10861246)
RGD PMID:10861246 PMID:21873635 RGD:13792537 NCBI chr 1:154,137,732...154,148,879
Ensembl chr 1:154,050,855...154,148,813
JBrowse link
G Neu4 neuraminidase 4 involved_in IBA
ISO
PMID:21873635
(PMID:15213228)
RGD PMID:15213228 PMID:21873635 RGD:13792537 NCBI chr 9:94,396,920...94,402,576
Ensembl chr 9:94,396,920...94,402,576
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose-bisphosphatase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:2,207,271...2,230,076
Ensembl chr17:2,208,031...2,230,071
JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:2,236,088...2,253,702
Ensembl chr17:2,236,336...2,253,698
JBrowse link
sucrose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Si sucrase-isomaltase involved_in ISO (PMID:27480812) RGD PMID:27480812 NCBI chr 2:157,505,893...157,586,228
Ensembl chr 2:157,506,342...157,585,260
JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Treh trehalase involved_in ISO (PMID:9427547) RGD PMID:9427547 NCBI chr 8:44,990,182...45,003,881
Ensembl chr 8:44,990,182...45,003,540
JBrowse link
trehalose metabolism in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in ISO (PMID:9837904) RGD PMID:9837904 NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      organic substance metabolic process 11355
        carbohydrate metabolic process 625
          oligosaccharide metabolic process 43
            6-alpha-maltosylglucose metabolic process + 0
            ajugose metabolic process + 0
            cellodextrin metabolic process + 0
            cellooligosaccharide metabolic process + 0
            cellotriose metabolic process + 0
            cellular oligosaccharide metabolic process + 3
            cyclodextrin metabolic process + 0
            disaccharide metabolic process + 9
            lipooligosaccharide metabolic process + 0
            lipopolysaccharide core region metabolic process + 0
            maltoheptaose metabolic process + 0
            oligosaccharide biosynthetic process + 14
            oligosaccharide catabolic process + 12
            raffinose metabolic process + 0
            stachyose metabolic process + 0
            verbascose metabolic process + 0
paths to the root