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ONTOLOGY REPORT - ANNOTATIONS

Term:oligosaccharide metabolic process
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Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690


show annotations for term's descendants           Sort by:
oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fut4 fucosyltransferase 4 involved_in ISO
ISS
IEA 		(PMID:1740457)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:1740457 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:19,868,178...19,872,139
Ensembl chr 8:19,868,079...19,872,436 		JBrowse link
G Gla galactosidase, alpha involved_in ISO
IBA 		(PMID:39940)
GO_REF:0000033 		RGD
GO_Central		 PMID:39940 GO_REF:0000033 NCBI chr  X:102,062,497...102,073,915
Ensembl chr  X:102,056,718...102,073,915 		JBrowse link
G Mogs mannosyl-oligosaccharide glucosidase involved_in IEA GO_REF:0000002
GO_REF:0000104 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 4:117,179,335...117,182,738
Ensembl chr 4:117,179,335...117,182,744 		JBrowse link
G Naga alpha-N-acetylgalactosaminidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:115,726,438...115,735,494
Ensembl chr 7:115,726,624...115,736,828 		JBrowse link
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in ISO
ISS 		(PMID:12235148)
GO_REF:0000024 		RGD
UniProt		 PMID:12235148 GO_REF:0000024 NCBI chr 9:9,508,928...9,606,900
Ensembl chr 9:9,509,548...9,594,007 		JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:244,789,627...245,304,975
Ensembl chr 2:244,789,627...245,304,977 		JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:36,269,834...36,282,971
Ensembl chr 3:36,269,878...36,282,971 		JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:244,398,604...244,571,100
Ensembl chr 2:244,402,589...244,571,097 		JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:36,283,573...36,305,217
Ensembl chr 3:36,283,629...36,305,216 		JBrowse link
G St8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:177,513,966...177,651,553
Ensembl chr 4:177,520,926...177,651,553 		JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO
IEA
IBA 		(PMID:10766765)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10766765 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:137,172,354...137,247,796
Ensembl chr 1:137,172,354...137,247,792 		JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in ISO
IEA
IBA 		(PMID:10766765)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10766765 GO_REF:0000033 GO_REF:0000107 NCBI chr18:60,024,555...60,031,050
Ensembl chr18:60,024,236...60,032,473 		JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO
IEA
IBA 		(PMID:10766765)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10766765 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:103,437,479...103,532,008
Ensembl chr 9:103,437,479...103,532,008 		JBrowse link
G St8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:73,010,235...73,072,984
Ensembl chr18:73,011,383...73,072,991 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in ISO
IEA 		(PMID:11980897)
GO_REF:0000107 		RGD
Ensembl		 PMID:11980897 GO_REF:0000107 NCBI chr17:81,649,866...81,847,970
Ensembl chr17:81,653,687...81,792,732 		JBrowse link
cellobiose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in IDA
ISO
IEA
IBA 		PMID:4752949
(PMID:3929764)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:3929764 PMID:4752949 GO_REF:0000033 GO_REF:0000107, RGD:151356630 NCBI chr13:42,334,347...42,376,872
Ensembl chr13:42,334,347...42,376,872 		JBrowse link
cyclodextrin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857409 (PMID:21697390)
GO_REF:0000107 		RGD
Ensembl		 PMID:21697390 GO_REF:0000107 NCBI chr18:3,654,237...3,699,853
Ensembl chr18:3,654,237...3,699,800 		JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		MGI:2450889 (PMID:9155011)
GO_REF:0000107 		RGD
Ensembl		 PMID:9155011 GO_REF:0000107 NCBI chr 5:60,731,601...60,778,456
Ensembl chr 5:60,731,602...60,778,445 		JBrowse link
G Lalba lactalbumin, alpha involved_in IEA
ISO 		GO_REF:0000043
GO_REF:0000117
GO_REF:0000002
MGI:3513842 (PMID:8022817) 		UniProt
InterPro
RGD		 PMID:8022817 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chr 7:131,504,572...131,520,707
Ensembl chr 7:131,504,572...131,507,072 		JBrowse link
lactose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in IDA
IBA
IEA
ISO 		PMID:4752949
GO_REF:0000033
GO_REF:0000107
(PMID:12594539), (PMID:3929764), (PMID:9762914) 		GO_Central
Ensembl
RGD		 PMID:3929764 PMID:9762914 PMID:12594539 PMID:4752949 GO_REF:0000033 GO_REF:0000107, RGD:151356630 NCBI chr13:42,334,347...42,376,872
Ensembl chr13:42,334,347...42,376,872 		JBrowse link
maltose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgam maltase-glucoamylase involved_in ISO (PMID:18036614), (PMID:22058037), (PMID:27480812) RGD PMID:18036614 PMID:22058037 PMID:27480812 NCBI chr 4:70,408,263...70,568,752
Ensembl chr 4:70,408,263...70,568,752 		JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (PMID:11278752) RGD PMID:11278752 NCBI chr 3:30,560,172...30,604,758 JBrowse link
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO
IEA 		(PMID:9417047)
GO_REF:0000107 		RGD
Ensembl		 PMID:9417047 GO_REF:0000107 NCBI chr 2:156,157,234...156,187,037
Ensembl chr 2:156,156,265...156,188,404 		JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:9582303)
(PMID:9417047) 		RGD PMID:9417047 PMID:9582303 NCBI chr 3:72,661,410...73,234,447
Ensembl chr 3:72,660,801...73,235,276 		JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO
IEA 		(PMID:9417047)
GO_REF:0000107 		RGD
Ensembl		 PMID:9417047 GO_REF:0000107 NCBI chr13:57,939,724...57,948,735
Ensembl chr13:57,930,539...57,956,539 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in 		TAS
IEA
ISO 		GO_REF:0000107
(PMID:9813328)
(PMID:2120039) 		Ensembl
RGD		 PMID:2120039 PMID:9813328 PMID:12098497 GO_REF:0000107, RGD:1302270 NCBI chr 5:60,731,601...60,778,456
Ensembl chr 5:60,731,602...60,778,445 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:41,729,507...41,782,222
Ensembl chr 8:41,724,563...41,782,222 		JBrowse link
G Fgf21 fibroblast growth factor 21 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:105,219,825...105,221,376
Ensembl chr 1:105,219,825...105,232,056 		JBrowse link
G Fut1 fucosyltransferase 1 involved_in ISO MGI:2183219 (PMID:11713270) RGD PMID:11713270 NCBI chr 1:105,223,399...105,226,817
Ensembl chr 1:105,223,390...105,227,513 		JBrowse link
G Fut10 fucosyltransferase 10 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr16:67,571,828...67,661,814
Ensembl chr16:67,581,565...67,661,753 		JBrowse link
G Fut2 fucosyltransferase 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:11323419) 		Ensembl
RGD		 PMID:11323419 GO_REF:0000107 NCBI chr 1:105,256,013...105,276,828
Ensembl chr 1:105,255,390...105,276,647 		JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISO MGI:3044951 (PMID:23986452) RGD PMID:23986452 NCBI chr 5:44,148,371...44,361,209
Ensembl chr 5:44,146,152...44,362,823 		JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:93,392,416...93,394,905
Ensembl chr 6:93,390,555...93,395,176 		JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in ISO
IEA
IBA 		UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11179430 PMID:11733564 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,873,467...54,880,536
Ensembl chr10:54,873,473...54,879,195 		JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA 		(PMID:9266697)
GO_REF:0000107 		RGD
Ensembl		 PMID:9266697 GO_REF:0000107 NCBI chr19:55,798,112...55,849,226
Ensembl chr19:55,799,471...55,849,225 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO
IEA 		(PMID:8288606)
GO_REF:0000107 		RGD
Ensembl		 PMID:8288606 GO_REF:0000107 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:41,673,510...41,712,551 		JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
(PMID:10788794) 		GO_Central
RGD		 PMID:10788794 GO_REF:0000033 NCBI chr10:102,471,481...102,481,876
Ensembl chr10:102,471,493...102,481,876 		JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (PMID:12668675) RGD PMID:12668675 NCBI chr 2:244,398,604...244,571,100
Ensembl chr 2:244,402,589...244,571,097 		JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (PMID:12668675) RGD PMID:12668675 NCBI chr 3:36,283,573...36,305,217
Ensembl chr 3:36,283,629...36,305,216 		JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctbs chitobiase involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:2751306 GO_REF:0000033, RGD:2301430 NCBI chr 2:238,000,800...238,015,368
Ensembl chr 2:238,000,842...238,015,475 		JBrowse link
G Gba3 glucosylceramidase beta 3 involved_in ISO (PMID:26193330) RGD PMID:26193330 NCBI chr14:64,787,601...64,934,043
Ensembl chr14:64,787,601...64,934,043 		JBrowse link
G Gm2a ganglioside GM2 activator acts_upstream_of_or_within ISO MGI:1861930 (PMID:9584189) RGD PMID:9584189 NCBI chr10:39,719,919...39,732,452
Ensembl chr10:39,719,938...39,732,451 		JBrowse link
G Hexb hexosaminidase subunit beta acts_upstream_of_or_within ISO
IEA 		MGI:1857438 (PMID:10021458), (PMID:15748167)
GO_REF:0000107 		RGD
Ensembl		 PMID:10021458 PMID:15748167 GO_REF:0000107 NCBI chr 2:30,218,608...30,238,771
Ensembl chr 2:30,218,608...30,238,771 		JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:39,959,964...39,979,299
Ensembl chr19:39,959,965...39,979,246 		JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 involved_in IEA
IBA 		GO_REF:0000107
GO_REF:0000033 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:66,434,480...66,445,649
Ensembl chr 8:66,434,421...66,445,648 		JBrowse link
G Neu1 neuraminidase 1 involved_in IEA
ISO
ISS
IBA 		GO_REF:0000107
(PMID:8985184)
GO_REF:0000024
GO_REF:0000033 		Ensembl
RGD
UniProt
GO_Central		 PMID:8985184 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:3,902,120...3,906,383
Ensembl chr20:3,902,120...3,906,383 		JBrowse link
G Neu2 neuraminidase 2 involved_in ISS
ISO
IEA
IBA 		GO_REF:0000024
(PMID:14613940), (PMID:22228546), (PMID:26193330)
GO_REF:0000107
GO_REF:0000033
(PMID:10713120) 		UniProt
RGD
Ensembl
GO_Central		 PMID:10713120 PMID:14613940 PMID:22228546 PMID:26193330 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:95,666,338...95,715,209
Ensembl chr 9:95,696,507...95,715,208 		JBrowse link
G Neu3 neuraminidase 3 involved_in ISO
IBA 		(PMID:10861246)
GO_REF:0000033 		RGD
GO_Central		 PMID:10861246 GO_REF:0000033 NCBI chr 1:163,549,834...163,560,997
Ensembl chr 1:163,549,738...163,561,049 		JBrowse link
G Neu4 neuraminidase 4 involved_in ISO
IBA 		(PMID:15213228)
GO_REF:0000033 		RGD
GO_Central		 PMID:15213228 GO_REF:0000033 NCBI chr 9:101,844,261...101,849,917
Ensembl chr 9:101,844,261...101,849,917 		JBrowse link
sucrose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Si sucrase-isomaltase involved_in ISO (PMID:27480812) RGD PMID:27480812 NCBI chr 2:159,804,568...159,884,902
Ensembl chr 2:159,804,568...159,883,934 		JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Treh trehalase involved_in ISO
IEA
IBA 		(PMID:9427547)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9427547 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:53,886,946...53,901,113
Ensembl chr 8:53,886,946...53,900,335 		JBrowse link
trehalose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Treh trehalase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:53,886,946...53,901,113
Ensembl chr 8:53,886,946...53,900,335 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      metabolic process 12252
        primary metabolic process 10845
          carbohydrate metabolic process 659
            oligosaccharide metabolic process 47
              6-alpha-maltosylglucose metabolic process + 0
              ajugose metabolic process + 0
              cellodextrin metabolic process + 0
              cellooligosaccharide metabolic process + 0
              cellotriose metabolic process + 0
              cyclodextrin metabolic process + 1
              disaccharide metabolic process + 6
              lipopolysaccharide core region metabolic process + 0
              maltoheptaose metabolic process + 0
              oligosaccharide biosynthetic process + 19
              oligosaccharide catabolic process + 14
              raffinose metabolic process + 0
              stachyose metabolic process + 0
              verbascose metabolic process + 0
paths to the root