Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:oligosaccharide metabolic process
go back to main search page
Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690


show annotations for term's descendants           Sort by:
oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fut4 fucosyltransferase 4 involved_in ISO
ISS
IEA		 (PMID:1740457)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:1740457 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:11,586,721...11,590,682
Ensembl chr 8:11,586,721...11,590,682 		JBrowse link
G Gla galactosidase, alpha involved_in ISO
IBA		 (PMID:39940)
GO_REF:0000033		 RGD
GO_Central		 PMID:39940 GO_REF:0000033 NCBI chr  X:97,769,227...97,780,646
Ensembl chr  X:97,768,996...97,780,664 		JBrowse link
G Mogs mannosyl-oligosaccharide glucosidase involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 4:115,621,623...115,625,026
Ensembl chr 4:115,621,623...115,625,032 		JBrowse link
G Naga alpha-N-acetylgalactosaminidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,846,358...113,855,430
Ensembl chr 7:113,846,374...113,855,315 		JBrowse link
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in ISO
ISS		 (PMID:12235148)
GO_REF:0000024		 RGD
UniProt		 PMID:12235148 GO_REF:0000024 NCBI chr 9:9,181,744...9,274,161
Ensembl chr 9:9,182,399...9,269,697 		JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:242,129,755...242,645,120
Ensembl chr 2:242,129,763...242,645,133 		JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,872,230...15,885,250
Ensembl chr 3:15,872,532...15,885,243 		JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208 		JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:15,894,275...15,907,502
Ensembl chr 3:15,885,968...15,907,496 		JBrowse link
G St8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:175,782,989...175,921,338
Ensembl chr 4:175,789,947...175,920,708 		JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO
IBA		 (PMID:10766765)
GO_REF:0000033		 RGD
GO_Central		 PMID:10766765 GO_REF:0000033 NCBI chr 1:127,762,573...127,838,017
Ensembl chr 1:127,762,573...127,838,091 		JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in ISO
IBA		 (PMID:10766765)
GO_REF:0000033		 RGD
GO_Central		 PMID:10766765 GO_REF:0000033 NCBI chr18:57,754,349...57,760,839
Ensembl chr18:57,754,347...57,760,839 		JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO
IBA		 (PMID:10766765)
GO_REF:0000033		 RGD
GO_Central		 PMID:10766765 GO_REF:0000033 NCBI chr 9:95,990,131...96,084,661
Ensembl chr 9:95,993,503...96,084,653 		JBrowse link
G St8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:70,736,395...70,802,537
Ensembl chr18:70,736,602...70,797,789 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IBA
ISO		 GO_REF:0000033
(PMID:11980897)		 GO_Central
RGD		 PMID:11980897 GO_REF:0000033 NCBI chr17:76,740,755...76,884,178
Ensembl chr17:76,745,224...76,884,299 		JBrowse link
cellobiose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in IDA
ISO
IEA		 PMID:4752949
(PMID:3929764)
GO_REF:0000107		 RGD
Ensembl		 PMID:3929764 PMID:4752949 GO_REF:0000107, RGD:151356630 NCBI chr13:39,781,929...39,824,456
Ensembl chr13:39,781,929...39,824,456 		JBrowse link
cyclodextrin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO MGI:1857409 (PMID:21697390) RGD PMID:21697390 NCBI chr18:3,379,482...3,425,100
Ensembl chr18:3,379,482...3,425,049 		JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2450889 (PMID:9155011)		 Ensembl
RGD		 PMID:9155011 GO_REF:0000107 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461 		JBrowse link
G Lalba lactalbumin, alpha involved_in IEA
ISO		 GO_REF:0000043
MGI:3513842 (PMID:8022817)		 UniProt
RGD		 PMID:8022817 GO_REF:0000043 NCBI chr 7:129,625,531...129,628,034
Ensembl chr 7:129,625,535...129,628,061 		JBrowse link
lactose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lct lactase involved_in IDA
IEA
ISO		 PMID:4752949
GO_REF:0000107
(PMID:12594539), (PMID:3929764), (PMID:9762914)		 Ensembl
RGD		 PMID:3929764 PMID:9762914 PMID:12594539 PMID:4752949 GO_REF:0000107, RGD:151356630 NCBI chr13:39,781,929...39,824,456
Ensembl chr13:39,781,929...39,824,456 		JBrowse link
maltose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgam maltase-glucoamylase involved_in ISO (PMID:18036614), (PMID:22058037), (PMID:27480812) RGD PMID:18036614 PMID:22058037 PMID:27480812 NCBI chr 4:69,441,626...69,602,068
Ensembl chr 4:69,446,150...69,692,715 		JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (PMID:11278752) RGD PMID:11278752 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423 		JBrowse link
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO (PMID:9417047) RGD PMID:9417047 NCBI chr 2:153,847,297...153,877,371
Ensembl chr 2:153,846,474...153,877,332 		JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:9582303)
(PMID:9417047)		 RGD PMID:9417047 PMID:9582303 NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313 		JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO (PMID:9417047) RGD PMID:9417047 NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in		 TAS
ISO		 (PMID:9813328)
(PMID:2120039)		 RGD PMID:2120039 PMID:9813328 PMID:12098497 RGD:1302270 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461 		JBrowse link
G Fut1 fucosyltransferase 1 involved_in ISO MGI:2183219 (PMID:11713270) RGD PMID:11713270 NCBI chr 1:96,086,934...96,090,352
Ensembl chr 1:96,086,635...96,090,616 		JBrowse link
G Fut10 fucosyltransferase 10 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23986452)		 Ensembl
RGD		 PMID:23986452 GO_REF:0000107 NCBI chr16:60,868,761...60,958,762
Ensembl chr16:60,877,952...60,958,683 		JBrowse link
G Fut2 fucosyltransferase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:11323419)		 Ensembl
RGD		 PMID:11323419 GO_REF:0000107 NCBI chr 1:96,119,549...96,139,567
Ensembl chr 1:96,119,371...96,140,360 		JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISO MGI:3044951 (PMID:23986452) RGD PMID:23986452 NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130 		JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177 		JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in ISO
IBA		 UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
GO_REF:0000033		 RGD
GO_Central		 PMID:11179430 PMID:11733564 GO_REF:0000033 NCBI chr10:54,374,719...54,380,301
Ensembl chr10:54,374,725...54,380,447 		JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA		 (PMID:9266697)
GO_REF:0000107		 RGD
Ensembl		 PMID:9266697 GO_REF:0000107 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869 		JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:33,415,666...33,465,319
Ensembl chr 8:33,415,671...33,524,389 		JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:10788794)		 GO_Central
RGD		 PMID:10788794 GO_REF:0000033 NCBI chr10:101,972,656...101,983,053
Ensembl chr10:101,972,668...101,983,053 		JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (PMID:12668675) RGD PMID:12668675 NCBI chr 2:241,741,933...241,911,214
Ensembl chr 2:241,742,688...241,911,208 		JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (PMID:12668675) RGD PMID:12668675 NCBI chr 3:15,894,275...15,907,502
Ensembl chr 3:15,885,968...15,907,496 		JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctbs chitobiase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2751306 GO_REF:0000033, RGD:2301430 NCBI chr 2:235,340,520...235,355,091
Ensembl chr 2:235,340,547...235,355,091 		JBrowse link
G Gba3 glucosylceramidase beta 3 involved_in ISO (PMID:26193330) RGD PMID:26193330 NCBI chr14:60,574,974...60,721,411
Ensembl chr14:60,574,976...60,721,653 		JBrowse link
G Gm2a ganglioside GM2 activator acts_upstream_of_or_within ISO MGI:1861930 (PMID:9584189) RGD PMID:9584189 NCBI chr10:39,219,221...39,231,756
Ensembl chr10:39,219,243...39,231,757 		JBrowse link
G Hexb hexosaminidase subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857438 (PMID:10021458), (PMID:15748167)		 Ensembl
RGD		 PMID:10021458 PMID:15748167 GO_REF:0000107 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223 		JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 involved_in ISO (PMID:9305783) RGD PMID:9305783 NCBI chr19:23,055,092...23,074,398
Ensembl chr19:23,055,097...23,074,389 		JBrowse link
G Man2b2 mannosidase, alpha, class 2B, member 2 involved_in ISO (PMID:29773673) RGD PMID:29773673 NCBI chr14:73,969,079...73,994,089
Ensembl chr14:73,969,003...74,004,281 		JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 involved_in IEA
ISO
IBA		 GO_REF:0000107
(PMID:16904268)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:16904268 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:57,537,879...57,549,691
Ensembl chr 8:57,537,321...57,549,690 		JBrowse link
G Manba mannosidase beta involved_in ISO (PMID:3447593) RGD PMID:3447593 NCBI chr 2:223,910,432...224,002,988
Ensembl chr 2:223,910,432...224,002,983 		JBrowse link
G Neu1 neuraminidase 1 involved_in IEA
ISO
ISS
IBA		 GO_REF:0000107
(PMID:8985184)
GO_REF:0000024
GO_REF:0000033		 Ensembl
RGD
UniProt
GO_Central		 PMID:8985184 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:3,897,480...3,901,745
Ensembl chr20:3,897,480...3,901,745 		JBrowse link
G Neu2 neuraminidase 2 involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:14613940), (PMID:22228546), (PMID:26193330)
GO_REF:0000107
GO_REF:0000033
(PMID:10713120)		 UniProt
RGD
Ensembl
GO_Central		 PMID:10713120 PMID:14613940 PMID:22228546 PMID:26193330 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:88,218,494...88,267,356
Ensembl chr 9:88,249,135...88,267,355 		JBrowse link
G Neu3 neuraminidase 3 involved_in ISO
IBA		 (PMID:10861246)
GO_REF:0000033		 RGD
GO_Central		 PMID:10861246 GO_REF:0000033 NCBI chr 1:154,137,732...154,148,879
Ensembl chr 1:154,050,855...154,148,813 		JBrowse link
G Neu4 neuraminidase 4 involved_in ISO
IBA		 (PMID:15213228)
GO_REF:0000033		 RGD
GO_Central		 PMID:15213228 GO_REF:0000033 NCBI chr 9:94,396,920...94,402,576
Ensembl chr 9:94,396,920...94,402,576 		JBrowse link
sucrose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Si sucrase-isomaltase involved_in ISO
IEA		 (PMID:27480812)
GO_REF:0000107		 RGD
Ensembl		 PMID:27480812 GO_REF:0000107 NCBI chr 2:157,505,893...157,586,228
Ensembl chr 2:157,506,342...157,585,260 		JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Treh trehalase involved_in ISO
IBA		 (PMID:9427547)
GO_REF:0000033		 RGD
GO_Central		 PMID:9427547 GO_REF:0000033 NCBI chr 8:44,990,182...45,003,881
Ensembl chr 8:44,990,182...45,003,540 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        primary metabolic process 10582
          carbohydrate metabolic process 649
            oligosaccharide metabolic process 47
              6-alpha-maltosylglucose metabolic process + 0
              ajugose metabolic process + 0
              cellodextrin metabolic process + 0
              cellooligosaccharide metabolic process + 0
              cellotriose metabolic process + 0
              cyclodextrin metabolic process + 1
              disaccharide metabolic process + 6
              lipopolysaccharide core region metabolic process + 0
              maltoheptaose metabolic process + 0
              oligosaccharide biosynthetic process + 17
              oligosaccharide catabolic process + 16
              raffinose metabolic process + 0
              stachyose metabolic process + 0
              verbascose metabolic process + 0
paths to the root