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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide metabolic process
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Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690


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oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07013843.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:259,149,018...259,150,479 JBrowse link
G Fut4 fucosyltransferase 4 involved_in ISO
ISS
IEA
(PMID:1740457)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:1740457 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:13,258,768...13,262,729
Ensembl chr 8:13,258,768...13,262,729
JBrowse link
G Gla galactosidase, alpha involved_in IBA
ISO
PMID:21873635
(PMID:39940)
RGD PMID:39940, PMID:21873635 RGD:13792537 NCBI chr  X:105,405,915...105,417,331
Ensembl chr  X:105,406,792...105,417,323
JBrowse link
G Mogs mannosyl-oligosaccharide glucosidase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:113,948,328...113,951,731
Ensembl chr 4:113,948,514...113,951,847
JBrowse link
G Naga alpha-N-acetylgalactosaminidase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:123,563,047...123,572,074
Ensembl chr 7:123,563,059...123,572,082
JBrowse link
G St3gal6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 involved_in ISO
IEA
ISS
(PMID:10206952)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:10206952 GO_REF:0000024 GO_REF:0000107 NCBI chr11:44,176,518...44,237,119
Ensembl chr11:44,192,940...44,237,100
JBrowse link
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in ISO
ISS
(PMID:12235148)
GO_REF:0000024
RGD
UniProt
PMID:12235148 GO_REF:0000024 NCBI chr 9:6,966,291...7,060,499
Ensembl chr 9:6,966,908...7,053,387
JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:259,379,653...259,918,813
Ensembl chr 2:259,379,509...259,898,525
JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,607,103...11,619,595
Ensembl chr 3:11,607,225...11,619,593
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:258,025,177...259,150,709
Ensembl chr 2:258,025,177...258,052,835
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,620,050...11,641,460
Ensembl chr 3:11,629,556...11,641,466
JBrowse link
G St8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:177,065,266...177,195,942
Ensembl chr 4:177,065,168...177,196,180
JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO
IBA
(PMID:10766765)
PMID:21873635
RGD PMID:10766765, PMID:21873635 RGD:13792537 NCBI chr 1:135,336,374...135,406,699
Ensembl chr 1:135,336,374...135,406,700
JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IBA
ISO
PMID:21873635
(PMID:10766765)
RGD PMID:10766765, PMID:21873635 RGD:13792537 NCBI chr18:59,748,766...59,755,257
Ensembl chr18:59,748,444...59,755,226
JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO
IBA
(PMID:10766765)
PMID:21873635
RGD PMID:10766765, PMID:21873635 RGD:13792537 NCBI chr 9:103,117,705...103,207,154
Ensembl chr 9:103,117,506...103,207,190
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IBA
ISO
PMID:21873635
(MGI:2182536|PMID:11980897)
RGD PMID:11980897, PMID:21873635 MGI:2182536, RGD:13792537 NCBI chr17:80,960,785...81,002,830
Ensembl chr17:80,960,785...81,002,838
JBrowse link
cellular oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba3 glucosylceramidase beta 3 involved_in ISO (PMID:26193330) RGD PMID:26193330 NCBI chr14:64,390,793...64,535,213
Ensembl chr14:64,390,793...64,535,170
JBrowse link
G Neu2 neuraminidase 2 involved_in ISO
IEA
(PMID:26193330)
GO_REF:0000107
RGD
Ensembl
PMID:26193330 GO_REF:0000107 NCBI chr 9:94,702,095...94,724,903
Ensembl chr 9:94,702,129...94,724,902
JBrowse link
cellular oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase IMP biosynthesis RGD PMID:12799344 RGD:2315736 NCBI chr 3:4,374,679...4,394,374
Ensembl chr 3:4,374,602...4,394,428
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2450889 (MGI:87365|PMID:9155011)
Ensembl
RGD
PMID:9155011 GO_REF:0000107 MGI:87365 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Lalba lactalbumin, alpha involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:140,088,420...140,096,347
Ensembl chr 7:140,088,421...140,090,922
JBrowse link
maltose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:108,395,873...108,412,999
Ensembl chr10:108,395,860...108,413,059
JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr 2:166,226,736...166,255,978
Ensembl chr 2:166,226,754...166,255,302
JBrowse link
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:9582303)
(MGI:1101659|PMID:9417047)
RGD PMID:9417047 PMID:9582303 MGI:1101659 NCBI chr 3:53,699,409...54,269,612
Ensembl chr 3:54,253,949...54,267,292
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within ISO (MGI:1101659|PMID:9417047) RGD PMID:9417047 MGI:1101659 NCBI chr13:60,435,946...60,444,957
Ensembl chr13:60,435,946...60,444,957
JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
TAS
ISO
(MGI:1290117|PMID:9813328)
(PMID:2120039)
RGD PMID:2120039 PMID:9813328, PMID:12098497 MGI:1290117, RGD:1302270 NCBI chr 5:57,121,768...57,168,610
Ensembl chr 5:57,121,769...57,168,610
JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:91,476,698...91,479,187
Ensembl chr 6:91,476,698...91,479,183
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:O75352 (PMID:11179430), (PMID:11733564)
RGD PMID:11179430 PMID:11733564, PMID:21873635 RGD:13792537 NCBI chr10:56,261,636...56,267,213
Ensembl chr10:56,261,637...56,267,213
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO
IEA
(PMID:9266697)
GO_REF:0000107
RGD
Ensembl
PMID:9266697 GO_REF:0000107 NCBI chr19:43,273,251...43,324,265
Ensembl chr19:43,274,493...43,290,363
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in ISO (PMID:8288606) RGD PMID:8288606 NCBI chr 8:36,264,741...36,314,811
Ensembl chr 8:36,264,750...36,314,811
JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within ISO (MGI:2153262|PMID:10788794) RGD PMID:10788794 MGI:2153262 NCBI chr10:105,713,305...105,723,700
Ensembl chr10:105,713,317...105,723,700
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 2:258,025,177...259,150,709
Ensembl chr 2:258,025,177...258,052,835
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (MGI:5284811|PMID:12668675) RGD PMID:12668675 MGI:5284811 NCBI chr 3:11,620,050...11,641,460
Ensembl chr 3:11,629,556...11,641,466
JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctbs chitobiase IDA RGD PMID:2751306 RGD:2301430 NCBI chr 2:252,305,874...252,320,387
Ensembl chr 2:252,305,874...252,320,387
JBrowse link
G Gm2a GM2 ganglioside activator acts_upstream_of_or_within ISO MGI:1861930 (MGI:1203907|PMID:9584189) RGD PMID:9584189 MGI:1203907 NCBI chr10:40,438,394...40,450,927
Ensembl chr10:40,438,356...40,450,930
JBrowse link
G Hexb hexosaminidase subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857438 (MGI:1331265|PMID:10021458), (MGI:3573807|PMID:15748167)
Ensembl
RGD
PMID:10021458 PMID:15748167 GO_REF:0000107 MGI:1331265 MGI:3573807 NCBI chr 2:27,983,925...28,003,260
Ensembl chr 2:27,984,117...28,003,186
JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:61,805,697...61,816,800
Ensembl chr 8:61,805,677...61,816,800
JBrowse link
G Neu1 neuraminidase 1 involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:8985184)
Ensembl
UniProt
RGD
PMID:8985184, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr20:4,610,995...4,615,258
Ensembl chr20:4,610,995...4,615,247
JBrowse link
G Neu2 neuraminidase 2 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:1354405|PMID:10713120)
GO_REF:0000024
(PMID:14613940), (PMID:22228546)
RGD
UniProt
PMID:10713120 PMID:14613940 PMID:22228546, PMID:21873635 GO_REF:0000024 MGI:1354405, RGD:13792537 NCBI chr 9:94,702,095...94,724,903
Ensembl chr 9:94,702,129...94,724,902
JBrowse link
G Neu3 neuraminidase 3 involved_in IBA
ISO
PMID:21873635
(PMID:10861246)
RGD PMID:10861246, PMID:21873635 RGD:13792537 NCBI chr 1:164,803,574...164,814,777
Ensembl chr 1:164,803,574...164,814,651
JBrowse link
G Neu4 neuraminidase 4 involved_in IBA
ISO
PMID:21873635
(PMID:15213228)
RGD PMID:15213228, PMID:21873635 RGD:13792537 NCBI chr 9:101,284,902...101,290,558
Ensembl chr 9:101,284,902...101,290,558
Ensembl chr 9:101,284,902...101,290,558
JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbp1 fructose-bisphosphatase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:396,175...417,480
Ensembl chr17:396,180...417,480
JBrowse link
G Fbp2 fructose-bisphosphatase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:372,554...389,918
Ensembl chr17:372,551...389,967
JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Treh trehalase involved_in ISO (PMID:9427547) RGD PMID:9427547 NCBI chr 8:48,983,802...48,998,072
Ensembl chr 8:48,983,802...48,997,191
JBrowse link
trehalose metabolism in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in ISO (PMID:9837904) RGD PMID:9837904 NCBI chr 4:67,389,331...67,520,549
Ensembl chr 4:67,396,192...67,520,356
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    metabolic process 11882
      organic substance metabolic process 11417
        carbohydrate metabolic process 628
          oligosaccharide metabolic process 41
            6-alpha-maltosylglucose metabolic process + 0
            ajugose metabolic process + 0
            cellodextrin metabolic process + 0
            cellooligosaccharide metabolic process + 0
            cellotriose metabolic process + 0
            cellular oligosaccharide metabolic process + 3
            cyclodextrin metabolic process + 0
            disaccharide metabolic process + 7
            lipooligosaccharide metabolic process + 0
            lipopolysaccharide core region metabolic process + 0
            maltoheptaose metabolic process + 0
            oligosaccharide biosynthetic process + 14
            oligosaccharide catabolic process + 10
            raffinose metabolic process + 0
            stachyose metabolic process + 0
            verbascose metabolic process + 0
paths to the root