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ONTOLOGY REPORT - ANNOTATIONS


Term:amine biosynthetic process
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Accession:GO:0009309 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine anabolism;   amine biosynthesis;   amine formation;   amine synthesis


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histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:121,505,677...121,525,416
Ensembl chr 1:121,505,742...121,525,255
JBrowse link
G LOC100625180 proteoglycan 3 ISO (PMID:10318872) UniProtKB PMID:10318872 NCBI chr 2:13,525,472...13,529,620 JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,400...273,225,558
JBrowse link
G LOC100511166 DBH-like monooxygenase protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:7,742,254...7,751,098 JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:31,282,491...31,367,589
Ensembl chr 1:31,282,506...31,369,408
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 IEA InterPro GO_REF:0000002 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 IEA UniProt GO_REF:0000043 NCBI chr 2:76,293,142...76,296,626
Ensembl chr 2:76,293,147...76,296,659
JBrowse link
G ODC1 ornithine decarboxylase 1 IEA InterPro GO_REF:0000002 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISS UniProt GO_REF:0000024 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G PAOX polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:74,773,359...74,784,486
Ensembl chr 6:74,773,324...74,784,468
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,221,368...34,257,261
Ensembl chr 4:34,209,008...34,257,136
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G LOC100520618 ornithine decarboxylase-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:88,047,044...88,061,905 JBrowse link
G ODC1 ornithine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SMS spermine synthase IEA InterPro GO_REF:0000002 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,468...18,169,396
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      nitrogen compound metabolic process 8919
        organonitrogen compound metabolic process 6091
          amine metabolic process 89
            amine biosynthetic process 17
              cellular biogenic amine biosynthetic process + 17
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.