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ONTOLOGY REPORT - ANNOTATIONS


Term:amine biosynthetic process
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Accession:GO:0009309 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine anabolism;   amine biosynthesis;   amine formation;   amine synthesis


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histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase IMP
IBA
ISO
(MGI:MGI:2138019|PMID:11478947)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11478947, PMID:21873635 GO_REF:0000096, MGI:MGI:2138019, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:126,593,659...126,624,025
Ensembl chr 2:126,593,667...126,619,299
JBrowse link
G Prg3 proteoglycan 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:84,988,196...84,996,559
Ensembl chr 2:84,988,215...84,993,886
JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta hydroxylase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:27,165,507...27,183,204
Ensembl chr 2:27,165,233...27,183,200
JBrowse link
G Moxd1 monooxygenase, DBH-like 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:24,223,517...24,302,783
Ensembl chr10:24,223,517...24,302,790
JBrowse link
G Moxd2 monooxygenase, DBH-like 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:40,878,794...40,887,494
Ensembl chr 6:40,878,794...40,887,494
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 S-adenosylmethionine decarboxylase 1 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr10:40,287,458...40,302,188
Ensembl chr10:40,287,458...40,302,188
JBrowse link
G Amd2 S-adenosylmethionine decarboxylase 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr10:35,708,691...35,711,891
Ensembl chr10:35,708,675...35,711,892
JBrowse link
G Azin1 antizyme inhibitor 1 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr15:38,487,430...38,519,294
Ensembl chr15:38,487,427...38,519,266
JBrowse link
G Azin2 antizyme inhibitor 2 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr 4:128,930,233...128,962,456
Ensembl chr 4:128,930,233...128,962,442
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr10:80,826,656...80,829,290
Ensembl chr10:80,826,656...80,829,290
JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 9:65,676,548...65,690,300
Ensembl chr 9:65,668,001...65,690,300
JBrowse link
G Oaz3 ornithine decarboxylase antizyme 3 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 3:94,433,387...94,436,651
Ensembl chr 3:94,432,414...94,443,915
JBrowse link
G Odc1 ornithine decarboxylase, structural 1 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr12:17,544,808...17,551,502
Ensembl chr12:17,544,794...17,551,505
JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:155,213,126...155,216,449
Ensembl chr  X:155,213,132...155,216,449
JBrowse link
G Sat2 spermidine/spermine N1-acetyl transferase 2 NOT ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr11:69,621,996...69,624,032
Ensembl chr11:69,622,024...69,623,870
JBrowse link
G Sms spermine synthase IEA UniProt GO_REF:0000004, MGI:MGI:1354194 NCBI chr  X:157,443,851...157,492,287
Ensembl chr  X:157,443,855...157,492,287
JBrowse link
G Srm spermidine synthase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:148,591,513...148,594,619
Ensembl chr 4:148,591,503...148,594,993
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase (exo-N4-amino) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:140,115,735...140,134,334
Ensembl chr 7:140,115,799...140,137,224
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatine ureohydrolase (agmatinase) IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:141,746,675...141,759,263
Ensembl chr 4:141,746,672...141,759,263
JBrowse link
G Odc1 ornithine decarboxylase, structural 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr12:17,544,808...17,551,502
Ensembl chr12:17,544,794...17,551,505
JBrowse link
G Paox polyamine oxidase (exo-N4-amino) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:140,115,735...140,134,334
Ensembl chr 7:140,115,799...140,137,224
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatine ureohydrolase (agmatinase) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:141,746,675...141,759,263
Ensembl chr 4:141,746,672...141,759,263
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:38,487,430...38,519,294
Ensembl chr15:38,487,427...38,519,266
JBrowse link
G Azin2 antizyme inhibitor 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:128,930,233...128,962,456
Ensembl chr 4:128,930,233...128,962,442
JBrowse link
G Ldc1 leucine decarboxylase 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:130,209,023...130,222,428
Ensembl chr 4:130,209,109...130,222,401
JBrowse link
G Odc1 ornithine decarboxylase, structural 1 IDA
IBA
(MGI:MGI:5574513|PMID:24967154)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:24967154 MGI:MGI:5574513, MGI:MGI:6201960 NCBI chr12:17,544,808...17,551,502
Ensembl chr12:17,544,794...17,551,505
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatine ureohydrolase (agmatinase) IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:141,746,675...141,759,263
Ensembl chr 4:141,746,672...141,759,263
JBrowse link
G Amd1 S-adenosylmethionine decarboxylase 1 IDA
IBA
(MGI:MGI:3584197|PMID:11856372)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11856372, PMID:21873635 MGI:MGI:3584197, MGI:MGI:6201960 NCBI chr10:40,287,458...40,302,188
Ensembl chr10:40,287,458...40,302,188
JBrowse link
G Amd2 S-adenosylmethionine decarboxylase 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:35,708,691...35,711,891
Ensembl chr10:35,708,675...35,711,892
JBrowse link
G Srm spermidine synthase ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:148,591,513...148,594,619
Ensembl chr 4:148,591,503...148,594,993
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 S-adenosylmethionine decarboxylase 1 IDA
IBA
(MGI:MGI:3584197|PMID:11856372)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:11856372, PMID:21873635 MGI:MGI:3584197, MGI:MGI:6201960 NCBI chr10:40,287,458...40,302,188
Ensembl chr10:40,287,458...40,302,188
JBrowse link
G Amd2 S-adenosylmethionine decarboxylase 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:35,708,691...35,711,891
Ensembl chr10:35,708,675...35,711,892
JBrowse link
G Sms spermine synthase ISO
IBA
(MGI:MGI:6201960|PMID:21873635) RGD
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:6201960 NCBI chr  X:157,443,851...157,492,287
Ensembl chr  X:157,443,855...157,492,287
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    metabolic process 11301
      nitrogen compound metabolic process 9396
        organonitrogen compound metabolic process 6299
          amine metabolic process 95
            amine biosynthetic process 20
              cellular biogenic amine biosynthetic process + 20
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.