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ONTOLOGY REPORT - ANNOTATIONS


Term:amine biosynthetic process
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Accession:GO:0009309 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine anabolism;   amine biosynthesis;   amine formation;   amine synthesis


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histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662
JBrowse link
G PRG3 proteoglycan 3, pro eosinophil major basic protein 2 IEA Ensembl GO_REF:0000107 NCBI chr18:38,765,682...38,769,711
Ensembl chr18:38,766,095...38,769,711
JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,004,806...50,024,130
Ensembl chr 9:50,004,806...50,024,130
JBrowse link
G LOC482755 putative DBH-like monooxygenase protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:7,019,646...7,042,005 JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:25,018,452...25,114,028
Ensembl chr 1:25,018,509...25,112,478
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IEA InterPro GO_REF:0000002 NCBI chr13:4,363,996...4,396,069
Ensembl chr13:4,361,340...4,396,040
JBrowse link
G AZIN2 antizyme inhibitor 2 IEA InterPro GO_REF:0000002 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 IEA UniProt GO_REF:0000043 NCBI chr20:56,769,317...56,770,921
Ensembl chr20:56,769,319...56,770,930
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,968,833...84,973,111
Ensembl chr 2:84,967,570...84,973,087
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO (PMID:16354669) UniProtKB PMID:16354669
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO (PMID:16354669) UniProtKB PMID:16354669
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:81,980,959...81,990,377
Ensembl chr 2:81,981,376...81,989,916
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:4,363,996...4,396,069
Ensembl chr13:4,361,340...4,396,040
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G ODC1 ornithine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,968,833...84,973,111
Ensembl chr 2:84,967,570...84,973,087
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
G SMS spermine synthase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr  X:17,749,020...17,803,351
Ensembl chr  X:17,749,530...17,802,999
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10657
      nitrogen compound metabolic process 9021
        organonitrogen compound metabolic process 6239
          amine metabolic process 86
            amine biosynthetic process 16
              cellular biogenic amine biosynthetic process + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.