Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:amine metabolic process
go back to main search page
Accession:GO:0009308 term browser browse the term
Definition:The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine metabolism


show annotations for term's descendants           Sort by:
 
amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aoc3 amine oxidase copper containing 3 ISO (PMID:9653080) UniProtKB PMID:9653080 NCBI chrNW_004936490:17,549,836...17,564,867 JBrowse link
G Inmt indolethylamine N-methyltransferase ISO (PMID:10552930) UniProtKB PMID:10552930 NCBI chrNW_004936478:6,997,605...7,002,649 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO (MGI:MGI:3703667|PMID:17052995) MGI PMID:17052995 MGI:MGI:3703667 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
G Vcam1 vascular cell adhesion molecule 1 ISO (PMID:23474851) UniProtKB PMID:23474851 NCBI chrNW_004936748:785,491...802,791 JBrowse link
benzylpenicillin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc2 ATP binding cassette subfamily C member 2 ISO RGD PMID:19255943 RGD:11081014 NCBI chrNW_004936636:292,631...341,999 JBrowse link
cellular biogenic amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO (MGI:MGI:3607765|PMID:15975715) MGI PMID:15975715 MGI:MGI:3607765 NCBI chrNW_004936809:902,938...967,771 JBrowse link
choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmgdh dimethylglycine dehydrogenase ISO (PMID:10102904) UniProtKB PMID:10102904 NCBI chrNW_004936549:6,838,773...6,899,961 JBrowse link
ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chka choline kinase alpha ISO RGD PMID:1577786 RGD:61551 NCBI chrNW_004936599:2,031,953...2,068,423 JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 ISO (MGI:MGI:3793397|PMID:18227059) UniProt PMID:18227059 MGI:MGI:3793397 NCBI chrNW_004936501:5,177,511...5,193,484 JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase ISO (PMID:22767596)
(MGI:MGI:2138019|PMID:11478947)
UniProtKB
MGI
PMID:11478947, PMID:22767596 MGI:MGI:2138019 NCBI chrNW_004936471:12,303,802...12,324,613 JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 ISO (PMID:10318872) UniProtKB PMID:10318872 NCBI chrNW_004936581:5,109,165...5,113,617 JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase ISO (PMID:26206890) UniProtKB PMID:26206890 NCBI chrNW_004936469:38,125,877...38,166,429 JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase ISO RGD PMID:5898, PMID:4449071, PMID:7075603, PMID:9525922 RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303735 NCBI chrNW_004936471:12,303,802...12,324,613 JBrowse link
G Hnmt histamine N-methyltransferase ISO (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chrNW_004936469:38,125,877...38,166,429 JBrowse link
G Trh thyrotropin releasing hormone ISO RGD PMID:17760865 RGD:7241067 NCBI chrNW_004936602:623,542...626,337 JBrowse link
N-acylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd4 abhydrolase domain containing 4, N-acyl phospholipase B ISO (MGI:MGI:3695251|PMID:16818490) MGI PMID:16818490 MGI:MGI:3695251 NCBI chrNW_004936722:1,658,287...1,671,848 JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 ISO (MGI:MGI:5790171|PMID:25596343)
(MGI:MGI:5295534|PMID:21801852)
MGI
UniProt
PMID:21801852, PMID:25596343 MGI:MGI:5295534, MGI:MGI:5790171 NCBI chrNW_004936501:5,177,511...5,193,484 JBrowse link
G Gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 ISO (MGI:MGI:5790171|PMID:25596343)
(MGI:MGI:6104349|PMID:27637550)
(PMID:25596343), (PMID:27637550)
MGI
UniProt
PMID:25596343, PMID:27637550 MGI:MGI:5790171, MGI:MGI:6104349 NCBI chrNW_004936490:4,032,412...4,079,243 JBrowse link
G Gdpd3 glycerophosphodiester phosphodiesterase domain containing 3 ISO (PMID:27637550)
(MGI:MGI:6104349|PMID:27637550)
UniProt PMID:27637550 MGI:MGI:6104349 NCBI chrNW_004936501:12,391,204...12,397,877 JBrowse link
G Naaa N-acylethanolamine acid amidase ISO (PMID:15655246), (PMID:30301806) UniProt PMID:15655246, PMID:30301806 NCBI chrNW_004936598:42,751...56,261 JBrowse link
G Napepld N-acyl phosphatidylethanolamine phospholipase D ISO (MGI:MGI:3044670|PMID:14634025)
(MGI:MGI:3695251|PMID:16818490)
MGI PMID:14634025, PMID:16818490 MGI:MGI:3044670, MGI:MGI:3695251 NCBI chrNW_004936479:20,259,260...20,293,116 JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chrNW_004936567:944,825...1,039,920 JBrowse link
negative regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO (MGI:MGI:54307|PMID:17511) MGI PMID:17511 MGI:MGI:54307 NCBI chrNW_004936683:2,874,022...2,936,214 JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chrNW_004936567:944,825...1,039,920 JBrowse link
negative regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase ISO RGD PMID:15190105 RGD:2289786 NCBI chrNW_004936619:3,847,059...3,883,866 JBrowse link
G Htr2c 5-hydroxytryptamine receptor 2C ISO RGD PMID:17018023 RGD:1625003 NCBI chrNW_004936499:1,002,083...1,109,446 JBrowse link
G Itgam integrin subunit alpha M ISO (MGI:MGI:3814938|PMID:18981141) ARUK-UCL PMID:18981141 MGI:MGI:3814938 NCBI chrNW_004936543:8,460,526...8,508,524 JBrowse link
G Snca synuclein alpha ISO PMID:11943812 BHF-UCL PMID:11943812 RGD:5129111 NCBI chrNW_004936685:2,077,017...2,175,298 JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atcay ATCAY kinesin light chain interacting caytaxin ISO (PMID:16899818) UniProtKB PMID:16899818 NCBI chrNW_004936588:2,196,556...2,226,489 JBrowse link
nor-spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 ISO (PMID:12803540) UniProtKB PMID:12803540 NCBI chrNW_004936595:891,380...892,937 JBrowse link
octopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase ISO RGD PMID:11521740 RGD:1625401 NCBI chrNW_004936669:3,302,014...3,326,233 JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maoa monoamine oxidase A ISO Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD PMID:11754741 RGD:1600709 NCBI chrNW_004936502:9,816,443...9,888,002 JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) UniProt PMID:15283699 NCBI chrNW_004936624:756,761...759,979 JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISO (PMID:15283699) UniProt PMID:15283699 NCBI chrNW_004936595:891,380...892,937 JBrowse link
polyamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO (MGI:MGI:2663545|PMID:12660232)
(PMID:12477380)
MGI
RGD
UniProtKB
PMID:12477380, PMID:12660232, PMID:15541750 MGI:MGI:2663545, RGD:7244190 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:15541750 RGD:7244190 NCBI chrNW_004936624:756,761...759,979 JBrowse link
G Smox spermine oxidase ISO (PMID:12477380) UniProtKB PMID:12477380 NCBI chrNW_004936485:14,566,570...14,603,323 JBrowse link
polyamine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936629:562,038...567,709 JBrowse link
G Hdac6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936721:757,500...778,416 JBrowse link
polyamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chrNW_004936564:6,656,789...6,675,564 JBrowse link
G Odc1 ornithine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:11172929 RGD:1599544 NCBI chrNW_004936624:756,761...759,979 JBrowse link
positive regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pebp1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:8888012 RGD:2302806 NCBI chrNW_004936668:2,316,661...2,323,015 JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO (MGI:MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:MGI:5306122 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epas1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chrNW_004936508:5,855,748...5,938,879 JBrowse link
G Park7 Parkinsonism associated deglycase ISO (PMID:19703902) ParkinsonsUK-UCL PMID:19703902 NCBI chrNW_004936623:2,422,780...2,436,817 JBrowse link
G Vps35 VPS35 retromer complex component ISO (MGI:MGI:5694519|PMID:26203154) ParkinsonsUK-UCL PMID:26203154 MGI:MGI:5694519 NCBI chrNW_004936475:50,476...77,797 JBrowse link
positive regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO RGD PMID:11239920 RGD:10047061 NCBI chrNW_004936530:7,543,743...7,621,392 JBrowse link
G Gpr37 G protein-coupled receptor 37 ISO (MGI:MGI:3046856|PMID:15218106) MGI PMID:15218106 MGI:MGI:3046856 NCBI chrNW_004936605:978,174...997,093 JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO (PMID:8643611) UniProtKB PMID:8643611 NCBI chrNW_004936691:650,753...694,362 JBrowse link
G Maob monoamine oxidase B ISO RGD PMID:12175458 RGD:2316765 NCBI chrNW_004936502:9,907,181...10,014,756 JBrowse link
G Npy neuropeptide Y ISO RGD PMID:19579268 RGD:10448966 NCBI chrNW_004936478:1,289,437...1,296,819 JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO (MGI:MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:MGI:5306122 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase ISO RGD PMID:15779086 RGD:2289784 NCBI chrNW_004936619:3,847,059...3,883,866 JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase ISO (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chrNW_004936623:2,422,780...2,436,817 JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
putrescine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 ISO (PMID:12803540) UniProtKB PMID:12803540 NCBI chrNW_004936595:891,380...892,937 JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Paox polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 ISO (MGI:MGI:5574513|PMID:24967154) UniProtKB PMID:24967154 MGI:MGI:5574513 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
putrescine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO (PMID:16354669) UniProtKB
UniProt
PMID:16354669 RGD:12790650 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
putrescine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aoc1 amine oxidase copper containing 1 ISO (PMID:8144586) UniProt PMID:8144586 NCBI chrNW_004936527:6,309,210...6,312,869 JBrowse link
regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor ISO (MGI:MGI:3628883|PMID:12204217) MGI PMID:12204217 MGI:MGI:3628883 NCBI chrNW_004936508:3,601,205...3,754,234 JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:4830440|PMID:19284480) UniProt PMID:19284480 MGI:MGI:4830440 NCBI chrNW_004936501:11,955,334...11,967,338 JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase ISO (MGI:MGI:5496931|PMID:23643539) UniProt PMID:23643539 MGI:MGI:5496931 NCBI chrNW_004936526:8,936,096...8,965,155 JBrowse link
G Slc7a7 solute carrier family 7 member 7 ISO (MGI:MGI:3760035|PMID:17376816) MGI PMID:17376816 MGI:MGI:3760035 NCBI chrNW_004936722:1,464,252...1,523,786 JBrowse link
regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vhl von Hippel-Lindau tumor suppressor ISO RGD PMID:11912140 RGD:619592 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
regulation of cellular amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ins insulin ISO (PMID:3553851) BHF-UCL PMID:3553851 NCBI chrNW_004936816:1,002,137...1,003,357 JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:MGI:3710059|PMID:17200146) MGI PMID:17200146 MGI:MGI:3710059 NCBI chrNW_004936535:9,177,305...9,242,743 JBrowse link
regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO (MGI:MGI:3618656|PMID:11282258) MGI PMID:11282258 MGI:MGI:3618656 NCBI chrNW_004936580:4,165,255...4,179,285 JBrowse link
G Drd1 dopamine receptor D1 ISO (MGI:MGI:2136539|PMID:11438590) MGI PMID:11438590 MGI:MGI:2136539 NCBI chrNW_004936609:790,647...795,187 JBrowse link
G Drd4 dopamine receptor D4 ISO (MGI:MGI:1097029|PMID:9323127) MGI PMID:9323127 MGI:MGI:1097029 NCBI chrNW_004936888:468,334...471,254 JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A ISO (MGI:MGI:1927024|PMID:11080193) UniProtKB PMID:11080193 MGI:MGI:1927024 NCBI chrNW_004936480:5,042,531...5,047,157 JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 ISO (MGI:MGI:2671567|PMID:12915123) MGI PMID:12915123 MGI:MGI:2671567 NCBI chrNW_004936469:21,912,118...21,920,486 JBrowse link
G Pde1b phosphodiesterase 1B ISO (MGI:MGI:3769297|PMID:17559891) MGI PMID:17559891 MGI:MGI:3769297 NCBI chrNW_004936512:11,739,219...11,766,264 JBrowse link
G Pnkd PNKD metallo-beta-lactamase domain containing ISO (MGI:MGI:5466578|PMID:22214848) MGI PMID:22214848 MGI:MGI:5466578 NCBI chrNW_004936569:799,963...865,462 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:22314364) ParkinsonsUK-UCL PMID:22314364 NCBI chrNW_004936489:12,118,538...12,913,664 JBrowse link
G Slc6a3 solute carrier family 6 member 3 ISO (MGI:MGI:2386819|PMID:9520487), (MGI:MGI:894559|PMID:9247269) MGI PMID:9247269, PMID:9520487 MGI:MGI:2386819, MGI:MGI:894559 NCBI chrNW_004936815:359,775...400,690 JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO RGD PMID:19858196 RGD:6484536 NCBI chrNW_004936531:6,899,580...7,019,016 JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO (MGI:MGI:5562570|PMID:24548853)
(MGI:MGI:4948153|PMID:21490221), (MGI:MGI:5616960|PMID:25429150)
MGI PMID:21490221, PMID:24548853, PMID:25429150 MGI:MGI:4948153, MGI:MGI:5562570, MGI:MGI:5616960 NCBI chrNW_004936535:9,177,305...9,242,743 JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt4 sirtuin 4 ISO (MGI:MGI:5490691|PMID:23562301) CACAO PMID:23562301 MGI:MGI:5490691 NCBI chrNW_004936668:628,875...633,425 JBrowse link
regulation of sulfur amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1a calcium voltage-gated channel subunit alpha1 A ISO (MGI:MGI:60450|PMID:1485534) MGI PMID:1485534 MGI:MGI:60450 NCBI chrNW_004936659:2,201,606...2,269,625 JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) RGD
UniProt
PMID:15283699, PMID:15541750 RGD:7244190 NCBI chrNW_004936624:756,761...759,979 JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISO (PMID:12803540)
(PMID:15283699)
UniProtKB
UniProt
PMID:12803540, PMID:15283699 NCBI chrNW_004936595:891,380...892,937 JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 ISO (MGI:MGI:3584197|PMID:11856372) RGD
MGI
PMID:1415709, PMID:10430362, PMID:10712236, PMID:11856372 MGI:MGI:3584197, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chrNW_004936564:6,656,789...6,675,564 JBrowse link
G Srm spermidine synthase ISO (PMID:17585781) RGD
UniProtKB
PMID:8494549, PMID:12843627, PMID:16931179, PMID:17585781 RGD:1359042, RGD:7242920, RGD:7242928 NCBI chrNW_004936474:121,135...124,894 JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase ISO RGD PMID:7721768 RGD:2316236 NCBI chrNW_004936659:1,803,581...1,810,121 JBrowse link
G Paox polyamine oxidase ISO (PMID:16354669) UniProtKB
RGD
UniProt
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936629:562,038...567,709 JBrowse link
G Hdac6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936721:757,500...778,416 JBrowse link
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase ISO (PMID:23525104) UniProtKB PMID:23525104 NCBI chrNW_004936659:1,803,581...1,810,121 JBrowse link
spermine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 ISO (PMID:12803540) UniProtKB PMID:12803540 NCBI chrNW_004936595:891,380...892,937 JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 ISO (MGI:MGI:3584197|PMID:11856372) RGD
MGI
PMID:1415709, PMID:10430362, PMID:10712236, PMID:11856372 MGI:MGI:3584197, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chrNW_004936564:6,656,789...6,675,564 JBrowse link
G Sms spermine synthase ISO RGD PMID:8494549 RGD:7242928 NCBI chrNW_004936624:2,345,573...2,402,157 JBrowse link
spermine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO PMID:16354669
(PMID:16354669)
UniProt
RGD
UniProtKB
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link
G Smox spermine oxidase ISO (PMID:18422650)
(MGI:MGI:2429361|PMID:12141946)
UniProtKB
MGI
RGD
PMID:12141946, PMID:15541750, PMID:18422650 MGI:MGI:2429361, RGD:7244190 NCBI chrNW_004936485:14,566,570...14,603,323 JBrowse link
spermine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sms spermine synthase ISO (MGI:MGI:1197776|PMID:9467015) MGI PMID:9467015 MGI:MGI:1197776 NCBI chrNW_004936624:2,345,573...2,402,157 JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chrNW_004936469:40,858,338...40,904,807 JBrowse link
G Kynu kynureninase ISO (PMID:17334708) UniProtKB PMID:17334708 NCBI chrNW_004936469:33,632,885...33,805,158 JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004936469:33,632,885...33,805,158 JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004936576:2,537,702...2,555,790 JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase ISO (MGI:MGI:3587527|PMID:15866519) MGI PMID:15866519 MGI:MGI:3587527 NCBI chrNW_004936594:2,794,927...2,805,689 JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO (MGI:MGI:2151782|PMID:2419335), (MGI:MGI:2156954|PMID:11751753) MGI
RGD
PMID:2419335, PMID:10719243, PMID:11513477, PMID:11751753 MGI:MGI:2151782, MGI:MGI:2156954, RGD:2290190, RGD:2290543 NCBI chrNW_004936843:658,058...672,662 JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 ISO (PMID:17671174)
(MGI:MGI:3719924|PMID:17671174)
(MGI:MGI:3712725|PMID:17499941)
UniProtKB
MGI
PMID:17499941, PMID:17671174 MGI:MGI:3712725, MGI:MGI:3719924 NCBI chrNW_004936843:595,237...649,390 JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO (PMID:27762317) UniProtKB PMID:27762317 NCBI chrNW_004936576:2,537,702...2,555,790 JBrowse link
tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO (MGI:MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:MGI:53851 NCBI chrNW_004936683:2,874,022...2,936,214 JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092, PMID:3899109, PMID:10719243 RGD:2290190, RGD:2290313, RGD:2291804 NCBI chrNW_004936576:2,537,702...2,555,790 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11968
    metabolic process 7653
      organic substance metabolic process 7353
        organonitrogen compound metabolic process 4476
          amine metabolic process 74
            2-aminobenzenesulfonate metabolic process + 0
            amine biosynthetic process + 9
            amine catabolic process + 13
            cellular amine metabolic process + 70
            cytokinin metabolic process + 0
            methane biosynthetic process from dimethylamine + 0
            methane biosynthetic process from trimethylamine + 0
            methylamine metabolic process + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.