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ONTOLOGY REPORT - ANNOTATIONS


Term:amine metabolic process
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Accession:GO:0009308 term browser browse the term
Definition:The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine metabolism


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amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,309,583...6,321,016
Ensembl chr18:6,306,835...6,320,974
JBrowse link
G AOC2 amine oxidase copper containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:20,021,987...20,027,967
Ensembl chr12:20,021,998...20,028,319
JBrowse link
G CYP1A1 cytochrome P450 1A1 IEA Ensembl GO_REF:0000107 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,780,105...58,809,755
JBrowse link
G INMT indolethylamine N-methyltransferase ISO (PMID:10552930) UniProtKB PMID:10552930 NCBI chr18:42,213,335...42,218,175
Ensembl chr18:42,209,402...42,218,174
JBrowse link
G LOC100520329 membrane primary amine oxidase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr12:20,013,616...20,021,507 JBrowse link
G LOC110256000 membrane primary amine oxidase-like IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr12:19,996,324...20,007,006 JBrowse link
G VCAM1 vascular cell adhesion molecule 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:117,496,914...117,511,211
Ensembl chr 4:117,496,908...117,511,226
JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA UniProt GO_REF:0000104 NCBI chr12:3,759,688...3,785,829
Ensembl chr12:3,759,708...3,785,836
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:97,580,756...97,595,033
Ensembl chr 3:97,580,851...97,595,021
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,491
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:9,277,039...9,344,405
Ensembl chr17:9,277,069...9,343,749
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr10:12,442,877...12,489,417
Ensembl chr10:12,431,982...12,490,409
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
benzylpenicillin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC2 ATP binding cassette subfamily C member 2 ISO RGD PMID:19255943 RGD:11081014 NCBI chr14:110,955,698...111,038,898
Ensembl chr14:110,955,656...111,078,873
JBrowse link
cellular biogenic amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,789,110
JBrowse link
choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMGDH dimethylglycine dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 2:87,791,827...87,867,189
Ensembl chr 2:87,678,811...87,866,856
JBrowse link
ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHKA choline kinase alpha ISO RGD PMID:1577786 RGD:61551 NCBI chr 2:4,788,508...4,846,667
Ensembl chr 2:4,788,412...4,846,667
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:26,190,261...26,205,851
Ensembl chr 3:26,190,287...26,206,222
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:121,505,677...121,525,416
Ensembl chr 1:121,505,742...121,525,255
JBrowse link
G LOC100625180 proteoglycan 3 ISO (PMID:10318872) UniProtKB PMID:10318872 NCBI chr 2:13,525,472...13,529,620 JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNMT histamine N-methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr15:13,733,412...13,768,106
Ensembl chr15:13,732,680...13,768,199
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase ISO RGD PMID:5898, PMID:4449071, PMID:7075603, PMID:9525922 RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303735 NCBI chr 1:121,505,677...121,525,416
Ensembl chr 1:121,505,742...121,525,255
JBrowse link
G HNMT histamine N-methyltransferase ISO (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chr15:13,733,412...13,768,106
Ensembl chr15:13,732,680...13,768,199
JBrowse link
G TRH thyrotropin releasing hormone ISO RGD PMID:17760865 RGD:7241067 NCBI chr13:69,362,892...69,366,183
Ensembl chr13:69,362,585...69,366,180
JBrowse link
N-acylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD4 abhydrolase domain containing 4, N-acyl phospholipase B ISO (MGI:MGI:3695251|PMID:16818490) MGI PMID:16818490 MGI:MGI:3695251 NCBI chr 7:76,396,548...76,431,836
Ensembl chr 7:76,397,028...76,431,809
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:26,190,261...26,205,851
Ensembl chr 3:26,190,287...26,206,222
JBrowse link
G GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:35,481,194...35,527,588
Ensembl chr12:35,481,215...35,528,092
JBrowse link
G GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:18,282,574...18,291,307
Ensembl chr 3:18,282,889...18,294,196
JBrowse link
G LOC100739561 glycerophosphodiester phosphodiesterase domain-containing protein 1 IBA (PMID:21873635) GO_Central PMID:21873635
G NAAA N-acylethanolamine acid amidase IEA Ensembl GO_REF:0000107 NCBI chr 8:71,573,783...71,603,256
Ensembl chr 8:71,573,783...71,603,338
JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D IEA Ensembl GO_REF:0000107 NCBI chr 9:103,210,655...103,309,018
Ensembl chr 9:103,210,748...103,262,454
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr 9:64,336,354...64,445,669
Ensembl chr 9:64,336,499...64,445,663
JBrowse link
negative regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:MGI:54307|PMID:17511) MGI PMID:17511 MGI:MGI:54307 NCBI chr  X:61,972,544...62,110,058
Ensembl chr  X:61,972,874...62,110,058
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr 9:64,336,354...64,445,669
Ensembl chr 9:64,336,499...64,445,663
JBrowse link
negative regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase ISO RGD PMID:15190105 RGD:2289786 NCBI chr14:51,384,729...51,403,997
Ensembl chr14:51,385,133...51,403,998
JBrowse link
G HTR2C 5-hydroxytryptamine receptor 2C ISO RGD PMID:17018023 RGD:1625003 NCBI chr  X:94,053,415...94,313,352
Ensembl chr  X:94,053,456...94,313,356
JBrowse link
G SNCA synuclein alpha ISO PMID:11943812 BHF-UCL PMID:11943812 RGD:5129111 NCBI chr 8:129,247,724...129,388,307
Ensembl chr 8:129,248,819...129,388,307
JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATCAY ATCAY kinesin light chain interacting caytaxin IEA Ensembl GO_REF:0000107 NCBI chr 2:74,800,048...74,838,923
Ensembl chr 2:74,800,048...74,838,671
JBrowse link
nor-spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,400...273,225,558
JBrowse link
G LOC100511166 DBH-like monooxygenase protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:7,742,254...7,751,098 JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:31,282,491...31,367,589
Ensembl chr 1:31,282,506...31,369,408
JBrowse link
octopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase ISO RGD PMID:11521740 RGD:1625401 NCBI chr 1:273,204,407...273,225,562
Ensembl chr 1:273,204,400...273,225,558
JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAOA monoamine oxidase A ISO RGD PMID:11754741 RGD:1600709 NCBI chr  X:38,930,452...39,006,220 JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 IEA UniProt GO_REF:0000043 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 IEA UniProt GO_REF:0000043 NCBI chr 2:76,293,142...76,296,626
Ensembl chr 2:76,293,147...76,296,659
JBrowse link
G ODC1 ornithine decarboxylase 1 IEA UniProt GO_REF:0000043 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISS UniProt GO_REF:0000024 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
polyamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase IEA Ensembl GO_REF:0000107 NCBI chr14:141,360,509...141,369,642 JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:15541750 RGD:7244190 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SMOX spermine oxidase ISO (PMID:12477380) UniProtKB PMID:12477380 NCBI chr17:31,552,927...31,592,007
Ensembl chr17:31,548,635...31,591,966
JBrowse link
polyamine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,805...445,340
JBrowse link
G HDAC6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,960...42,941,890
JBrowse link
polyamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 IEA InterPro GO_REF:0000002 NCBI chr 1:107,325,225...107,338,475
Ensembl chr 1:107,325,190...107,341,469
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:11172929 RGD:1599544 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
positive regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEBP1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:8888012 RGD:2302806 NCBI chr14:34,523,901...34,530,238 JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 IEA Ensembl GO_REF:0000107 NCBI chr 5:83,607,222...83,732,668
Ensembl chr 5:83,604,288...83,684,604
JBrowse link
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPAS1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chr 3:94,167,759...94,253,662
Ensembl chr 3:94,165,815...94,254,079
JBrowse link
G PARK7 Parkinsonism associated deglycase IEA Ensembl GO_REF:0000107 NCBI chr 6:68,629,327...68,645,147
Ensembl chr 6:68,629,214...68,645,520
JBrowse link
G VPS35 VPS35 retromer complex component IEA Ensembl GO_REF:0000107 NCBI chr 6:37,944,099...37,977,091
Ensembl chr 6:37,944,127...37,986,203
JBrowse link
positive regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase ISO RGD PMID:11239920 RGD:10047061 NCBI chr 3:33,913,068...33,960,804
Ensembl chr 3:33,908,965...34,015,469
JBrowse link
G GPR37 G protein-coupled receptor 37 IEA Ensembl GO_REF:0000107 NCBI chr18:23,019,752...23,036,483
Ensembl chr18:23,019,744...23,038,397
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr  X:110,321,144...110,357,902
Ensembl chr  X:110,321,208...110,357,899
JBrowse link
G MAOB monoamine oxidase B ISO RGD PMID:12175458 RGD:2316765 NCBI chr  X:39,025,973...39,144,389
Ensembl chr  X:39,025,971...39,144,345
JBrowse link
G NPY neuropeptide Y ISO RGD PMID:19579268 RGD:10448966 NCBI chr18:47,985,796...47,993,726
Ensembl chr18:47,985,725...47,993,289
JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO (MGI:MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:MGI:5306122 NCBI chr 5:83,607,222...83,732,668
Ensembl chr 5:83,604,288...83,684,604
JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase ISO RGD PMID:15779086 RGD:2289784 NCBI chr14:51,384,729...51,403,997
Ensembl chr14:51,385,133...51,403,998
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase IEA Ensembl GO_REF:0000107 NCBI chr 6:68,629,327...68,645,147
Ensembl chr 6:68,629,214...68,645,520
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G PAOX polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:74,773,359...74,784,486
Ensembl chr 6:74,773,324...74,784,468
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,221,368...34,257,261
Ensembl chr 4:34,209,008...34,257,136
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G LOC100520618 ornithine decarboxylase-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:88,047,044...88,061,905 JBrowse link
G ODC1 ornithine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
putrescine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase ISO (PMID:16354669) UniProtKB
UniProt
PMID:16354669 RGD:12790650 NCBI chr14:141,360,509...141,369,642 JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 IEA UniProt GO_REF:0000041 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA UniProt GO_REF:0000041 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
putrescine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 IMP
ISS
IEA
(PMID:8144586) UniProt
Ensembl
PMID:8144586 GO_REF:0000024, GO_REF:0000107 NCBI chr18:6,309,583...6,321,016
Ensembl chr18:6,306,835...6,320,974
JBrowse link
regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296 JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FH fumarate hydratase ISS UniProt GO_REF:0000024 NCBI chr10:12,404,143...12,431,843
Ensembl chr10:12,404,176...12,431,801
JBrowse link
G SLC7A7 solute carrier family 7 member 7 IEA Ensembl GO_REF:0000107 NCBI chr 7:76,195,774...76,235,406
Ensembl chr 7:76,144,113...76,236,873
JBrowse link
regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VHL von Hippel-Lindau tumor suppressor ISO RGD PMID:11912140 RGD:619592 NCBI chr13:66,334,535...66,342,401
Ensembl chr13:66,334,591...66,342,654
JBrowse link
regulation of cellular amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INS insulin IEA Ensembl GO_REF:0000107 NCBI chr 2:1,496,842...1,498,052
Ensembl chr 2:1,496,842...1,497,841
JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 8:88,608,083...88,690,589
Ensembl chr 8:88,607,884...88,940,100
JBrowse link
regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr 4:95,196,992...95,211,084
Ensembl chr 4:95,198,717...95,211,037
JBrowse link
G DRD1 dopamine receptor D1 IEA Ensembl GO_REF:0000107 NCBI chr16:49,189,555...49,193,722
Ensembl chr16:49,188,936...49,193,709
JBrowse link
G DRD4 dopamine receptor D4 IEA Ensembl GO_REF:0000107 NCBI chr 2:398,766...401,539
Ensembl chr 2:398,766...401,432
JBrowse link
G HTR1A 5-hydroxytryptamine receptor 1A ISO (MGI:MGI:1927024|PMID:11080193) UniProtKB PMID:11080193 MGI:MGI:1927024 NCBI chr16:42,479,812...42,484,365 JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 IEA Ensembl GO_REF:0000107 NCBI chr15:63,487,051...63,506,249
Ensembl chr15:63,487,698...63,505,244
JBrowse link
G PDE1B phosphodiesterase 1B IEA Ensembl GO_REF:0000107 NCBI chr 5:19,725,346...19,752,892
Ensembl chr 5:19,725,415...19,752,890
JBrowse link
G PNKD PNKD metallo-beta-lactamase domain containing IEA Ensembl GO_REF:0000107 NCBI chr15:120,345,541...120,411,648
Ensembl chr15:120,345,551...120,413,353
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,511...6,730,881
JBrowse link
G SLC6A3 solute carrier family 6 member 3 IEA Ensembl GO_REF:0000107 NCBI chr16:79,186,114...79,220,302
Ensembl chr16:79,186,108...79,220,297
JBrowse link
G TACR3 tachykinin receptor 3 ISO RGD PMID:8574643 RGD:2305963 NCBI chr 8:117,662,122...117,718,317
Ensembl chr 8:117,662,122...117,721,624
JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway ISO RGD PMID:19858196 RGD:6484536 NCBI chr 2:116,913,354...116,985,303
Ensembl chr 2:116,812,582...117,034,912
JBrowse link
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr 8:88,608,083...88,690,589
Ensembl chr 8:88,607,884...88,940,100
JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT4 sirtuin 4 IEA Ensembl GO_REF:0000107 NCBI chr14:40,290,288...40,303,887
Ensembl chr14:40,286,955...40,303,888
JBrowse link
regulation of sulfur amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1A calcium voltage-gated channel subunit alpha1 A ISO (MGI:MGI:60450|PMID:1485534) MGI PMID:1485534 MGI:MGI:60450 NCBI chr 2:65,491,784...65,871,068 JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2D25 vitamin D3 25-Hydroxylase ISO RGD PMID:23098818 RGD:11353778 NCBI chr 5:6,539,021...6,543,643
Ensembl chr 5:6,538,907...6,543,643
JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) RGD
UniProt
PMID:15283699, PMID:15541750 RGD:7244190 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT IBA
IEA
ISS
(PMID:21873635) GO_Central
Ensembl
UniProt
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase ISO RGD PMID:7721768 RGD:2316236 NCBI chr 2:66,303,375...66,307,773
Ensembl chr 2:66,303,370...66,307,770
JBrowse link
G PAOX polyamine oxidase ISO (PMID:16354669) RGD
UniProtKB
UniProt
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191 NCBI chr14:141,360,509...141,369,642 JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IEA Ensembl GO_REF:0000107 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,805...445,340
JBrowse link
G HDAC6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:42,917,911...42,941,894
Ensembl chr  X:42,917,960...42,941,890
JBrowse link
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase IEA Ensembl GO_REF:0000107 NCBI chr 2:66,303,375...66,307,773
Ensembl chr 2:66,303,370...66,307,770
JBrowse link
spermine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SMS spermine synthase IEA InterPro GO_REF:0000002 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,468...18,169,396
JBrowse link
spermine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase ISO PMID:16354669
(PMID:16354669)
RGD
UniProt
UniProtKB
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191 NCBI chr14:141,360,509...141,369,642 JBrowse link
G SMOX spermine oxidase IEA Ensembl GO_REF:0000107 NCBI chr17:31,552,927...31,592,007
Ensembl chr17:31,548,635...31,591,966
JBrowse link
spermine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMS spermine synthase ISO (MGI:MGI:1197776|PMID:9467015) MGI PMID:9467015 MGI:MGI:1197776 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,468...18,169,396
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr15:17,121,950...17,164,005
Ensembl chr15:17,106,724...17,163,899
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IEA UniProt GO_REF:0000104 NCBI chr 3:97,580,756...97,595,033
Ensembl chr 3:97,580,851...97,595,021
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr10:12,442,877...12,489,417
Ensembl chr10:12,431,982...12,490,409
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr12:3,759,688...3,785,829
Ensembl chr12:3,759,708...3,785,836
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,491
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:9,277,039...9,344,405
Ensembl chr17:9,277,069...9,343,749
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000041 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link
tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:MGI:53851 NCBI chr  X:61,972,544...62,110,058
Ensembl chr  X:61,972,874...62,110,058
JBrowse link
G GCDH glutaryl-CoA dehydrogenase IEA UniProt GO_REF:0000041 NCBI chr 2:66,131,154...66,138,963
Ensembl chr 2:66,130,625...66,138,868
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092, PMID:3899109, PMID:10719243 RGD:2290190, RGD:2290313, RGD:2291804 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    metabolic process 10565
      organic substance metabolic process 10015
        organonitrogen compound metabolic process 6072
          amine metabolic process 89
            2-aminobenzenesulfonate metabolic process + 0
            amine biosynthetic process + 17
            amine catabolic process + 16
            cellular amine metabolic process + 83
            cytokinin metabolic process + 0
            methane biosynthetic process from dimethylamine + 0
            methane biosynthetic process from trimethylamine + 0
            methylamine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.