Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:amine metabolic process
go back to main search page
Accession:GO:0009308 term browser browse the term
Definition:The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
Synonyms:exact_synonym: amine metabolism


show annotations for term's descendants           Sort by:
 
amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr16:14,955,528...14,963,283
Ensembl chr16:14,958,658...15,036,651
JBrowse link
G AOC2 amine oxidase copper containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:20,180,005...20,185,863
Ensembl chr 9:20,180,205...20,185,103
JBrowse link
G AOC3 amine oxidase copper containing 3 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 9:20,158,581...20,179,773
Ensembl chr 9:20,157,410...20,241,376
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 IEA Ensembl GO_REF:0000107 NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
JBrowse link
G SLC9C2 solute carrier family 9 member C2 (putative) IEA InterPro GO_REF:0000002 NCBI chr 7:25,553,745...25,659,461
Ensembl chr 7:25,508,239...25,659,475
JBrowse link
G VCAM1 vascular cell adhesion molecule 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:49,341,669...49,359,841
Ensembl chr 6:49,342,151...49,359,933
JBrowse link
G WNK4 WNK lysine deficient protein kinase 4 IEA UniProt GO_REF:0000104 NCBI chr 9:20,224,726...20,241,214
Ensembl chr 9:20,157,410...20,241,376
JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIRC5 baculoviral IAP repeat containing 5 IEA UniProt GO_REF:0000104 NCBI chr 9:2,930,308...2,959,307 JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:45,368,157...45,379,521
Ensembl chr10:45,368,178...45,379,160
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:25,391,759...25,407,161
Ensembl chr16:25,391,754...25,407,048
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:25,319,035...25,375,085
Ensembl chr16:25,319,035...25,385,515
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr 7:32,941,487...32,994,541
Ensembl chr 7:32,941,487...32,994,541
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
benzylpenicillin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC2 ATP binding cassette subfamily C member 2 ISO RGD PMID:19255943 RGD:11081014 NCBI chr28:12,670,885...12,740,124
Ensembl chr28:12,670,885...12,740,740
JBrowse link
cellular biogenic amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 IEA Ensembl GO_REF:0000107 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMGDH dimethylglycine dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 3:27,789,089...27,857,348
Ensembl chr 3:27,790,324...27,856,601
JBrowse link
ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHKA choline kinase alpha ISO RGD PMID:1577786 RGD:61551 NCBI chr18:49,717,512...49,784,653
Ensembl chr18:49,745,437...49,781,882
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:25,740,741...25,765,404
Ensembl chr 6:25,740,765...25,758,489
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662
JBrowse link
G PRG3 proteoglycan 3, pro eosinophil major basic protein 2 IEA Ensembl GO_REF:0000107 NCBI chr18:38,765,682...38,769,711
Ensembl chr18:38,766,095...38,769,711
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNMT histamine N-methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr19:40,656,266...40,702,498
Ensembl chr19:40,655,161...40,702,218
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDC histidine decarboxylase ISO RGD PMID:5898, PMID:4449071, PMID:7075603, PMID:9525922 RGD:2303726, RGD:2303727, RGD:2303728, RGD:2303735 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662
JBrowse link
G HNMT histamine N-methyltransferase ISO (PMID:23505051) ARUK-UCL PMID:23505051 NCBI chr19:40,656,266...40,702,498
Ensembl chr19:40,655,161...40,702,218
JBrowse link
G TRH thyrotropin releasing hormone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:5,219,495...5,222,914
Ensembl chr20:5,219,594...5,222,866
JBrowse link
N-acylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD4 abhydrolase domain containing 4, N-acyl phospholipase B ISO (MGI:MGI:3695251|PMID:16818490) MGI PMID:16818490 MGI:MGI:3695251 NCBI chr 8:2,997,112...3,011,524
Ensembl chr 8:2,997,202...3,011,056
JBrowse link
G GDE1 glycerophosphodiester phosphodiesterase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:25,740,741...25,765,404
Ensembl chr 6:25,740,765...25,758,489
JBrowse link
G GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:33,773,365...33,827,131
Ensembl chr 9:33,773,411...33,826,411
JBrowse link
G GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:18,103,273...18,108,818
Ensembl chr 6:18,103,267...18,108,533
JBrowse link
G NAAA N-acylethanolamine acid amidase ISO (PMID:15655246), (PMID:30301806) UniProt PMID:15655246, PMID:30301806 NCBI chr32:483,317...504,304 JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:16,945,096...16,990,752
Ensembl chr18:16,945,253...17,009,607
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr38:321,246...420,262
Ensembl chr38:366,656...416,952
JBrowse link
negative regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:MGI:54307|PMID:17511) MGI PMID:17511 MGI:MGI:54307 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr38:321,246...420,262
Ensembl chr38:366,656...416,952
JBrowse link
negative regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase ISO RGD PMID:15190105 RGD:2289786 NCBI chr26:29,359,930...29,381,854
Ensembl chr26:29,360,356...29,366,008
JBrowse link
G HTR2C 5-hydroxytryptamine receptor 2C ISO RGD PMID:17018023 RGD:1625003 NCBI chr  X:87,342,800...87,641,224
Ensembl chr  X:87,342,792...87,638,579
JBrowse link
G ITGAM integrin subunit alpha M ISO (MGI:MGI:3814938|PMID:18981141) ARUK-UCL PMID:18981141 MGI:MGI:3814938 NCBI chr 6:16,944,062...16,996,525
Ensembl chr 6:16,808,971...16,996,286
JBrowse link
G SNCA synuclein alpha ISO PMID:11943812 BHF-UCL PMID:11943812 RGD:5129111 NCBI chr32:12,915,871...13,079,338
Ensembl chr32:12,916,215...13,060,383
JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATCAY ATCAY kinesin light chain interacting caytaxin IEA Ensembl GO_REF:0000107 NCBI chr20:55,610,124...55,641,879
Ensembl chr20:55,612,260...55,641,832
JBrowse link
nor-spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,004,806...50,024,130
Ensembl chr 9:50,004,806...50,024,130
JBrowse link
G LOC482755 putative DBH-like monooxygenase protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:7,019,646...7,042,005 JBrowse link
G MOXD1 monooxygenase DBH like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:25,018,452...25,114,028
Ensembl chr 1:25,018,509...25,112,478
JBrowse link
octopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase ISO RGD PMID:11521740 RGD:1625401 NCBI chr 9:50,004,806...50,024,130
Ensembl chr 9:50,004,806...50,024,130
JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAOA monoamine oxidase A ISO RGD PMID:11754741 RGD:1600709 NCBI chr  X:37,678,933...37,744,757
Ensembl chr  X:37,677,493...37,744,757
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IEA InterPro GO_REF:0000002 NCBI chr13:4,363,996...4,396,069
Ensembl chr13:4,361,340...4,396,040
JBrowse link
G AZIN2 antizyme inhibitor 2 IEA InterPro GO_REF:0000002 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 IEA UniProt GO_REF:0000043 NCBI chr20:56,769,317...56,770,921
Ensembl chr20:56,769,319...56,770,930
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT ISO (PMID:15283699) UniProt PMID:15283699 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,968,833...84,973,111
Ensembl chr 2:84,967,570...84,973,087
JBrowse link
polyamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO (MGI:MGI:2663545|PMID:12660232)
(PMID:12477380)
MGI
RGD
UniProtKB
PMID:12477380, PMID:12660232, PMID:15541750 MGI:MGI:2663545, RGD:7244190
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:15541750 RGD:7244190 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
G SMOX spermine oxidase ISO (PMID:12477380) UniProtKB PMID:12477380 NCBI chr24:17,240,910...17,291,258
Ensembl chr24:17,252,537...17,300,451
JBrowse link
polyamine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262
JBrowse link
G HDAC6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427
JBrowse link
polyamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 IEA InterPro GO_REF:0000002 NCBI chr30:29,122,556...29,126,513
Ensembl chr30:29,122,556...29,126,512
JBrowse link
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:11172929 RGD:1599544 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
positive regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEBP1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:8888012 RGD:2302806 NCBI chr26:14,522,124...14,526,370
Ensembl chr26:14,500,074...14,529,354
JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 IEA Ensembl GO_REF:0000107 NCBI chr15:39,497,313...39,608,120
Ensembl chr15:39,536,290...39,608,116
JBrowse link
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPAS1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chr10:48,550,836...48,636,776
Ensembl chr10:48,551,410...48,634,844
JBrowse link
G PARK7 Parkinsonism associated deglycase ISO (PMID:19703902) ParkinsonsUK-UCL PMID:19703902 NCBI chr 5:61,576,219...61,592,325
Ensembl chr 5:61,576,069...61,592,303
JBrowse link
G VPS35 VPS35 retromer complex component IEA Ensembl GO_REF:0000107 NCBI chr15:8,428,073...8,454,601
Ensembl chr15:8,428,172...8,454,049
JBrowse link
positive regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase ISO RGD PMID:11239920 RGD:10047061 NCBI chr 6:33,385,779...33,471,348
Ensembl chr 6:33,376,996...33,471,326
JBrowse link
G GPR37 G protein-coupled receptor 37 IEA Ensembl GO_REF:0000107 NCBI chr14:11,113,584...11,137,639
Ensembl chr14:11,114,415...11,132,395
JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 ISS UniProtKB GO_REF:0000024 NCBI chr  X:105,115,732...105,153,702
Ensembl chr  X:105,115,732...105,153,702
JBrowse link
G MAOB monoamine oxidase B ISO RGD PMID:12175458 RGD:2316765 NCBI chr  X:37,765,810...37,883,955
Ensembl chr  X:37,765,813...37,883,955
JBrowse link
G NPY neuropeptide Y ISO RGD PMID:19579268 RGD:10448966 NCBI chr14:37,824,579...37,831,289
Ensembl chr14:37,823,861...37,831,443
JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO (MGI:MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:MGI:5306122 NCBI chr15:39,497,313...39,608,120
Ensembl chr15:39,536,290...39,608,116
JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMT catechol-O-methyltransferase ISO RGD PMID:15779086 RGD:2289784 NCBI chr26:29,359,930...29,381,854
Ensembl chr26:29,360,356...29,366,008
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase ISO (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chr 5:61,576,219...61,592,325
Ensembl chr 5:61,576,069...61,592,303
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO (PMID:16354669) UniProtKB PMID:16354669
putrescine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO (PMID:16354669) UniProtKB PMID:16354669
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709, PMID:10430362 RGD:1578320, RGD:7242912 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:81,980,959...81,990,377
Ensembl chr 2:81,981,376...81,989,916
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:4,363,996...4,396,069
Ensembl chr13:4,361,340...4,396,040
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G ODC1 ornithine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link
putrescine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO PMID:16354669
(PMID:16354669)
UniProt
UniProtKB
PMID:16354669 RGD:12790650
G SAT1 spermidine/spermine N1-acetyltransferase 1 IEA UniProt GO_REF:0000041 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
putrescine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AOC1 amine oxidase copper containing 1 ISS UniProt GO_REF:0000024 NCBI chr16:14,955,528...14,963,283
Ensembl chr16:14,958,658...15,036,651
JBrowse link
regulation of acetylcholine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr10:50,765,591...50,938,643
Ensembl chr10:50,770,995...50,938,474
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin IEA
ISS
Ensembl
UniProt
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FH fumarate hydratase ISO (MGI:MGI:5496931|PMID:23643539) UniProt PMID:23643539 MGI:MGI:5496931 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
JBrowse link
G SLC7A7 solute carrier family 7 member 7 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 8:3,132,735...3,209,259
Ensembl chr 8:3,133,139...3,165,832
JBrowse link
regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VHL von Hippel-Lindau tumor suppressor ISO RGD PMID:11912140 RGD:619592 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
regulation of cellular amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INS insulin ISO (PMID:3553851) BHF-UCL PMID:3553851 NCBI chr18:46,324,047...46,324,933
Ensembl chr18:46,324,041...46,325,122
JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr19:4,289,792...4,379,060
Ensembl chr19:4,289,850...4,389,048
JBrowse link
regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr 7:42,786,505...42,797,976
Ensembl chr 7:42,789,600...42,795,722
JBrowse link
G DRD1 dopamine receptor D1 ISO (MGI:MGI:2136539|PMID:11438590) MGI PMID:11438590 MGI:MGI:2136539 NCBI chr 4:37,550,454...37,554,641
Ensembl chr 4:37,549,708...37,553,287
JBrowse link
G HTR1A 5-hydroxytryptamine receptor 1A ISS UniProtKB GO_REF:0000024 NCBI chr 2:50,005,277...50,006,548
Ensembl chr 2:50,002,740...50,006,548
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 IEA Ensembl GO_REF:0000107 NCBI chr36:2,546,237...2,554,559
Ensembl chr36:2,547,421...2,552,780
JBrowse link
G PDE1B phosphodiesterase 1B IEA Ensembl GO_REF:0000107 NCBI chr27:772,741...800,967
Ensembl chr27:772,056...800,375
JBrowse link
G PNKD PNKD metallo-beta-lactamase domain containing IEA Ensembl GO_REF:0000107 NCBI chr37:24,948,763...25,008,542
Ensembl chr37:24,948,932...25,005,144
JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase IEA Ensembl GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764
JBrowse link
G SLC6A3 solute carrier family 6 member 3 IEA Ensembl GO_REF:0000107 NCBI chr34:11,209,118...11,245,456
Ensembl chr34:11,210,939...11,246,742
JBrowse link
G TACR3 tachykinin receptor 3 ISO RGD PMID:8574643 RGD:2305963 NCBI chr32:24,812,344...24,888,452
Ensembl chr32:24,812,119...24,907,580
JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway ISO RGD PMID:19858196 RGD:6484536 NCBI chr 3:252,052...380,506
Ensembl chr 3:253,081...322,993
JBrowse link
G SLC7A11 solute carrier family 7 member 11 IEA Ensembl GO_REF:0000107 NCBI chr19:4,289,792...4,379,060
Ensembl chr19:4,289,850...4,389,048
JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT4 sirtuin 4 IEA Ensembl GO_REF:0000107 NCBI chr26:16,228,831...16,244,104
Ensembl chr26:16,234,710...16,240,012
JBrowse link
regulation of sulfur amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1A calcium voltage-gated channel subunit alpha1 A IEA Ensembl GO_REF:0000107 NCBI chr20:48,747,087...49,036,627
Ensembl chr20:48,821,025...49,036,032
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2D15 cytochrome P450 2D ISO RGD PMID:23098818 RGD:11353778 NCBI chr10:23,255,259...23,259,380
Ensembl chr10:23,255,249...23,259,298
JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT1 spermidine/spermine N1-acetyltransferase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT IBA
ISO
(PMID:21873635)
(PMID:15283699)
GO_Central
UniProt
PMID:15283699, PMID:21873635 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
G SRM spermidine synthase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,968,833...84,973,111
Ensembl chr 2:84,967,570...84,973,087
JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase ISO RGD PMID:7721768 RGD:2316236 NCBI chr20:49,435,956...49,439,493
Ensembl chr20:49,435,844...49,439,479
JBrowse link
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO PMID:16354669
(PMID:16354669)
UniProt
UniProtKB
RGD
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IEA Ensembl GO_REF:0000107 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262
JBrowse link
G HDAC6 histone deacetylase 6 NOT ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427
JBrowse link
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase ISO (PMID:23525104) UniProtKB PMID:23525104 NCBI chr20:49,435,956...49,439,493
Ensembl chr20:49,435,844...49,439,479
JBrowse link
spermine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696
JBrowse link
G SMS spermine synthase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr  X:17,749,020...17,803,351
Ensembl chr  X:17,749,530...17,802,999
JBrowse link
spermine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480798 peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like ISO PMID:16354669
(PMID:16354669)
UniProt
UniProtKB
RGD
PMID:7560898, PMID:16354669 RGD:12790650, RGD:7244191
G SMOX spermine oxidase IEA Ensembl GO_REF:0000107 NCBI chr24:17,240,910...17,291,258
Ensembl chr24:17,252,537...17,300,451
JBrowse link
spermine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMS spermine synthase ISO (MGI:MGI:1197776|PMID:9467015) MGI PMID:9467015 MGI:MGI:1197776 NCBI chr  X:17,749,020...17,803,351
Ensembl chr  X:17,749,530...17,802,999
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr19:37,658,999...37,725,426
Ensembl chr19:37,659,226...37,725,172
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProtKB GO_REF:0000104 NCBI chr 7:32,941,487...32,994,541
Ensembl chr 7:32,941,487...32,994,541
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIRC5 baculoviral IAP repeat containing 5 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 9:2,930,308...2,959,307 JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:25,391,759...25,407,161
Ensembl chr16:25,391,754...25,407,048
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr16:25,319,035...25,375,085
Ensembl chr16:25,319,035...25,385,515
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA UniProtKB GO_REF:0000041 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958
JBrowse link
tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha ISO (MGI:MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:MGI:53851 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092, PMID:3899109, PMID:10719243 RGD:2290190, RGD:2290313, RGD:2291804 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      organic substance metabolic process 10116
        organonitrogen compound metabolic process 6194
          amine metabolic process 86
            2-aminobenzenesulfonate metabolic process + 0
            amine biosynthetic process + 16
            amine catabolic process + 14
            cellular amine metabolic process + 80
            cytokinin metabolic process + 0
            methane biosynthetic process from dimethylamine + 0
            methane biosynthetic process from trimethylamine + 0
            methylamine metabolic process + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.