Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
go back to main search page
Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
rRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ang angiogenin involved_in ISO (PMID:15735021)
(PMID:33758201)
(PMID:27518564), (PMID:29100074), (PMID:32510170) 		UniProt PMID:15735021 PMID:27518564 PMID:29100074 PMID:32510170 PMID:33758201 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G Cavin1 caveolae associated protein 1 involved_in ISO (PMID:27528195) UniProt PMID:27528195 NCBI chrNW_004936490:17,197,585...17,200,041 JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,644,457...1,665,081
Ensembl chrNW_004936646:1,644,457...1,665,086 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:21444791 RGD:11535018 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Npm3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:3,997,549...3,999,620
Ensembl chrNW_004936600:3,997,285...3,999,630 		JBrowse link
G Polr1a RNA polymerase I subunit A ISO RGD PMID:9422795 RGD:2312782 NCBI chrNW_004936712:1,331,016...1,390,544
Ensembl chrNW_004936712:1,331,073...1,389,856 		JBrowse link
G Polr1b RNA polymerase I subunit B acts_upstream_of_or_within ISO
IEA 		RGD
Ensembl		 PMID:9422795 GO_REF:0000107 RGD:2312782 NCBI chrNW_004936783:1,034,097...1,055,798
Ensembl chrNW_004936783:1,034,054...1,056,384 		JBrowse link
G Polr1g RNA polymerase I subunit G acts_upstream_of_or_within ISO (PMID:15226435) MGI PMID:15226435 NCBI chrNW_004936706:1,852,350...1,854,921
Ensembl chrNW_004936706:1,852,359...1,857,623 		JBrowse link
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
G Spin1 spindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936854:448,403...516,251
Ensembl chrNW_004936854:448,296...516,355 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:3033639 RGD:2317069 NCBI chrNW_004936561:641,451...723,323
Ensembl chrNW_004936561:641,423...723,518 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
5S class rRNA transcription by RNA polymerase III term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf3c1 general transcription factor IIIC subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:11,125,126...11,189,400
Ensembl chrNW_004936501:11,124,243...11,189,562 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:436,949...448,670
Ensembl chrNW_004936903:435,447...448,025 		JBrowse link
G LOC101956559 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269
Ensembl chrNW_004936521:8,473,794...8,509,268 		JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:5,265,489...5,284,231
Ensembl chrNW_004936524:5,265,441...5,288,417 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:6,118,241...6,194,506
Ensembl chrNW_004936532:6,117,864...6,184,138 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15249688) TreeGrafter
MGI		 PMID:15249688 GO_REF:0000118 NCBI chrNW_004936504:4,533,993...4,569,997
Ensembl chrNW_004936504:4,533,981...4,570,055 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,200,588...2,254,130
Ensembl chrNW_004936487:2,198,973...2,254,151 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,644,457...1,665,081
Ensembl chrNW_004936646:1,644,457...1,665,086 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Nol11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:5,448,346...5,475,064
Ensembl chrNW_004936541:5,448,658...5,475,020 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,321,278...3,326,720
Ensembl chrNW_004936664:3,321,136...3,326,093 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,436,137...7,457,709
Ensembl chrNW_004936492:7,431,990...7,457,709 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,276,239...1,308,945
Ensembl chrNW_004936619:1,275,362...1,308,913 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938 		JBrowse link
G LOC101959095 RNA polymerase I and III subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:22,841,094...22,842,798
Ensembl chrNW_004936472:22,841,094...22,881,713 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936546:5,732,413...5,746,481
Ensembl chrNW_004936546:5,731,825...5,746,569 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:494,445...499,659
Ensembl chrNW_004936588:494,399...499,952 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004936541:671,178...687,485
Ensembl chrNW_004936541:671,157...684,240 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    cellular process 17013
      metabolic process 11289
        macromolecule metabolic process 9423
          macromolecule biosynthetic process 7361
            gene expression 6964
              DNA-templated transcription 2999
                rRNA transcription 36
                  5S class rRNA transcription by RNA polymerase III 1
                  nucleolar large rRNA transcription by RNA polymerase I + 25
                  plastid rRNA transcription 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    cellular process 17013
      metabolic process 11289
        primary metabolic process 10018
          nucleobase-containing compound metabolic process 6153
            nucleobase-containing compound biosynthetic process 5296
              nucleic acid biosynthetic process 5050
                RNA biosynthetic process 4947
                  DNA-templated transcription 2999
                    rRNA transcription 36
                      5S class rRNA transcription by RNA polymerase III 1
                      nucleolar large rRNA transcription by RNA polymerase I + 25
                      plastid rRNA transcription 0
paths to the root