Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
go back to main search page
Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
rRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in ISO (PMID:27528195) UniProt PMID:27528195 NCBI chrNW_004624795:1,624,535...1,635,409
Ensembl chrNW_004624795:1,624,373...1,634,292 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chrNW_004624802:10,443,216...10,460,971
Ensembl chrNW_004624802:10,443,223...10,460,971 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:21444791 RGD:11535018 NCBI chrNW_004624733:18,645,269...18,655,073 JBrowse link
G Npm3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within ISO (PMID:15596447) MGI PMID:15596447 NCBI chrNW_004624831:1,261,652...1,263,417
Ensembl chrNW_004624831:1,261,652...1,263,387 		JBrowse link
G Polr1a RNA polymerase I subunit A ISO RGD PMID:9422795 RGD:2312782 NCBI chrNW_004624749:17,138,352...17,216,039
Ensembl chrNW_004624749:17,138,476...17,215,124 		JBrowse link
G Polr1b RNA polymerase I subunit B acts_upstream_of_or_within ISO
IEA 		RGD
Ensembl		 PMID:9422795 GO_REF:0000107 RGD:2312782 NCBI chrNW_004624749:12,602,078...12,625,200
Ensembl chrNW_004624749:12,602,004...12,625,200 		JBrowse link
G Polr1g RNA polymerase I subunit G acts_upstream_of_or_within ISO (PMID:15226435) MGI PMID:15226435 NCBI chrNW_004624907:2,286,040...2,288,533
Ensembl chrNW_004624907:2,286,050...2,288,242 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (PMID:19174463) UniProt PMID:19174463 NCBI chrNW_004624801:10,753,480...10,760,601
Ensembl chrNW_004624801:10,753,333...10,764,122 		JBrowse link
G Spin1 spindlin 1 involved_in ISO (PMID:21960006) UniProt PMID:21960006 NCBI chrNW_004624765:24,223,499...24,271,049
Ensembl chrNW_004624765:24,222,380...24,271,046 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:3033639 RGD:2317069 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:18809582) MGI PMID:18809582 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
5S class rRNA transcription by RNA polymerase III term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf3c1 general transcription factor IIIC subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:12,073,895...12,141,397
Ensembl chrNW_004624782:12,074,781...12,141,315 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain containing acts_upstream_of_or_within ISO (PMID:9774341) MGI PMID:9774341 NCBI chrNW_004624794:243,584...254,495
Ensembl chrNW_004624794:244,068...255,110 		JBrowse link
G LOC101706296 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101712013 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:4,227,897...4,276,595
Ensembl chrNW_004624754:4,227,644...4,279,077 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) UniProt PMID:27729611 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004624930:1,104,387...1,120,580
Ensembl chrNW_004624930:1,104,311...1,122,077 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624865:5,089,425...5,128,228
Ensembl chrNW_004624865:5,088,926...5,128,289 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chrNW_004624774:9,660,272...9,699,708 JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) UniProt PMID:26089203 NCBI chrNW_004624828:269,444...301,899
Ensembl chrNW_004624828:269,843...302,301 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO (PMID:23203802) CAFA PMID:23203802 NCBI chrNW_004624868:3,722,713...3,781,639
Ensembl chrNW_004624868:3,722,800...3,779,747 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chrNW_004624802:10,443,216...10,460,971
Ensembl chrNW_004624802:10,443,223...10,460,971 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:24036451) UniProt PMID:24036451 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Ncl nucleolin involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004624843:4,620,501...4,630,521 JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chrNW_004624870:706,755...732,541
Ensembl chrNW_004624870:707,020...732,667 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283)
(PMID:24036451) 		UniProt PMID:22368283 PMID:24036451 NCBI chrNW_004624832:4,757,367...4,761,974
Ensembl chrNW_004624832:4,757,344...4,762,181 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) FlyBase PMID:29065309 NCBI chrNW_004624750:2,103,530...2,119,088
Ensembl chrNW_004624750:2,103,469...2,119,166 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004624801:10,753,480...10,760,601
Ensembl chrNW_004624801:10,753,333...10,764,122 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624928:458,651...532,201
Ensembl chrNW_004624928:463,279...530,115 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624785:70,425...82,098
Ensembl chrNW_004624785:69,978...82,012 		JBrowse link
G Polr1d RNA polymerase I and III subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624776:10,872,975...10,874,852
Ensembl chrNW_004624776:10,810,952...10,875,214 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:10,905,010...10,916,141
Ensembl chrNW_004624739:10,904,932...10,917,075 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,547,401...7,553,282
Ensembl chrNW_004624828:7,547,460...7,553,282 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624795:768,627...779,174
Ensembl chrNW_004624795:768,697...780,639 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17646
    cellular process 17217
      metabolic process 10993
        macromolecule metabolic process 9099
          macromolecule biosynthetic process 6992
            gene expression 6569
              DNA-templated transcription 3197
                rRNA transcription 36
                  5S class rRNA transcription by RNA polymerase III 1
                  nucleolar large rRNA transcription by RNA polymerase I + 26
                  plastid rRNA transcription 0
Path 2
Term Annotations click to browse term
  biological_process 17646
    cellular process 17217
      metabolic process 10993
        primary metabolic process 9826
          nucleobase-containing compound metabolic process 5857
            nucleobase-containing compound biosynthetic process 4974
              nucleic acid biosynthetic process 4727
                RNA biosynthetic process 4612
                  DNA-templated transcription 3197
                    rRNA transcription 36
                      5S class rRNA transcription by RNA polymerase III 1
                      nucleolar large rRNA transcription by RNA polymerase I + 26
                      plastid rRNA transcription 0
paths to the root