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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
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Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis

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rRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANG angiogenin involved_in ISO (PMID:15735021)
(PMID:33758201)
(PMID:27518564)
(PMID:27518564), (PMID:29100074), (PMID:32510170) 		UniProt PMID:15735021 PMID:27518564 PMID:29100074 PMID:32510170 PMID:33758201 NCBI chr29:21,215,985...21,226,927 JBrowse link
G CAVIN1 caveolae associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:63,840,693...63,863,162
Ensembl chr16:63,840,859...63,863,296 		JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A acts_upstream_of_or_within ISO (PMID:18809582) MGI PMID:18809582
G MARS1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chr11:53,397,380...53,410,596 JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr11:53,397,357...53,424,681 JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:21444791 RGD:11535018 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NPM3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:94,809,050...94,811,169
Ensembl chr 9:94,809,468...94,811,091 		JBrowse link
G POLR1A RNA polymerase I subunit A ISO RGD PMID:9422795 RGD:2312782 NCBI chr14:21,050,526...21,127,010
Ensembl chr14:21,050,799...21,125,990 		JBrowse link
G POLR1B RNA polymerase I subunit B acts_upstream_of_or_within ISO
IEA 		RGD
Ensembl		 PMID:9422795 GO_REF:0000107 RGD:2312782 NCBI chr14:15,549,963...15,585,947
Ensembl chr14:15,550,254...15,584,521 		JBrowse link
G POLR1G RNA polymerase I subunit G acts_upstream_of_or_within ISO (PMID:15226435) MGI PMID:15226435 NCBI chr 6:38,853,681...38,857,241
Ensembl chr 6:38,853,874...38,859,288 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G SPIN1 spindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:98,880,918...98,964,988
Ensembl chr12:98,913,798...98,960,934 		JBrowse link
G TOP1 DNA topoisomerase I ISO RGD PMID:3033639 RGD:2317069 NCBI chr 2:22,655,085...22,751,082
Ensembl chr 2:22,651,995...22,751,102 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
5S class rRNA transcription by RNA polymerase III term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF3C1 general transcription factor IIIC subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:25,165,672...25,252,370
Ensembl chr 5:25,165,539...25,252,346 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:2,848,294...2,858,746
Ensembl chr20:2,848,510...2,858,618 		JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:61,194,887...61,254,361
Ensembl chr 9:61,195,431...61,231,228 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:43,082,707...43,101,416
Ensembl chr12:43,083,197...43,108,367 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:97,704,251...97,787,738
Ensembl chr14:97,704,187...97,787,639 		JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chr23:52,966,341...53,007,539
Ensembl chr23:52,966,419...53,006,288 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G IPPK inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:103,122,293...103,184,453
Ensembl chr12:103,123,557...103,184,174 		JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chr11:53,397,380...53,410,596 JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr11:53,397,357...53,424,681 JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,522,667...120,678,988
Ensembl chr20:120,525,737...120,679,020 		JBrowse link
G NCL nucleolin involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr10:117,478,279...117,487,810 JBrowse link
G NCL nucleolin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:117,477,904...117,486,774 JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,720,229...53,747,715
Ensembl chr16:53,720,571...53,747,658 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,627,125...42,633,467
Ensembl chr 6:42,627,097...42,632,932 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:102,917,553...102,943,696
Ensembl chr11:102,917,606...102,942,481 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G POLR1F RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:38,488,802...38,501,106
Ensembl chr21:38,488,825...38,501,158 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:844,196...856,127
Ensembl chr 6:841,615...855,214 		JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr16:62,168,288...62,184,902
Ensembl chr16:62,171,666...62,182,320 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19706
    cellular process 19211
      metabolic process 12971
        macromolecule metabolic process 11003
          macromolecule biosynthetic process 8824
            gene expression 8411
              DNA-templated transcription 3356
                rRNA transcription 39
                  5S class rRNA transcription by RNA polymerase III 1
                  nucleolar large rRNA transcription by RNA polymerase I + 27
                  plastid rRNA transcription 0
Path 2
Term Annotations click to browse term
  biological_process 19706
    cellular process 19211
      metabolic process 12971
        primary metabolic process 11397
          nucleobase-containing compound metabolic process 7275
            nucleobase-containing compound biosynthetic process 6357
              nucleic acid biosynthetic process 6100
                RNA biosynthetic process 5996
                  DNA-templated transcription 3356
                    rRNA transcription 39
                      5S class rRNA transcription by RNA polymerase III 1
                      nucleolar large rRNA transcription by RNA polymerase I + 27
                      plastid rRNA transcription 0
paths to the root