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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
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Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis

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rRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in ISO (PMID:27528195) UniProt PMID:27528195 NCBI chrNW_004955451:16,364,915...16,374,523
Ensembl chrNW_004955451:16,364,915...16,374,634 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chrNW_004955458:5,215,853...5,233,037
Ensembl chrNW_004955458:5,215,853...5,233,037 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:21444791 RGD:11535018 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Npm3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within ISO (PMID:15596447) MGI PMID:15596447 NCBI chrNW_004955485:8,510,404...8,512,198 JBrowse link
G Polr1a RNA polymerase I subunit A ISO RGD PMID:9422795 RGD:2312782 NCBI chrNW_004955424:1,507,935...1,595,068
Ensembl chrNW_004955424:1,508,037...1,593,108 		JBrowse link
G Polr1b RNA polymerase I subunit B acts_upstream_of_or_within ISO (PMID:18023416) RGD
MGI		 PMID:9422795 PMID:18023416 RGD:2312782 NCBI chrNW_004955470:1,714,156...1,737,749
Ensembl chrNW_004955470:1,714,156...1,737,820 		JBrowse link
G Polr1g RNA polymerase I subunit G acts_upstream_of_or_within ISO (PMID:15226435) MGI PMID:15226435 NCBI chrNW_004955555:2,389,569...2,393,410
Ensembl chrNW_004955555:2,391,106...2,393,369 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (PMID:19174463) UniProt PMID:19174463 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728 		JBrowse link
G Spin1 spindlin 1 involved_in ISO (PMID:21960006) UniProt PMID:21960006 NCBI chrNW_004955515:3,470,956...3,518,909
Ensembl chrNW_004955515:3,470,956...3,513,728 		JBrowse link
G Top1 DNA topoisomerase I ISO RGD PMID:3033639 RGD:2317069 NCBI chrNW_004955445:15,834,017...15,922,785
Ensembl chrNW_004955445:15,834,017...15,922,785 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:18809582) MGI PMID:18809582 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain containing acts_upstream_of_or_within ISO (PMID:9774341) MGI PMID:9774341 NCBI chrNW_004955468:12,885,547...12,897,522
Ensembl chrNW_004955468:12,885,553...12,897,164 		JBrowse link
G LOC102008188 core histone macro-H2A.1 involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118 		JBrowse link
G LOC102017503 core histone macro-H2A.2 involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004955437:21,126,581...21,186,308
Ensembl chrNW_004955437:21,126,006...21,186,797 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) UniProt PMID:27729611 NCBI chrNW_004955574:1,505,997...1,514,680
Ensembl chrNW_004955574:1,506,022...1,517,130 		JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004955419:28,970,982...28,983,862
Ensembl chrNW_004955419:28,967,083...28,983,862 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within ISO (PMID:15249688) MGI PMID:15249688 NCBI chrNW_004955415:4,138,495...4,174,735
Ensembl chrNW_004955415:4,140,262...4,174,762 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) UniProt PMID:26089203 NCBI chrNW_004955524:1,932,988...1,957,231
Ensembl chrNW_004955524:1,932,729...1,957,231 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO (PMID:23203802) CAFA PMID:23203802 NCBI chrNW_004955515:5,170,164...5,219,130
Ensembl chrNW_004955515:5,170,164...5,219,130 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chrNW_004955458:5,215,853...5,233,037
Ensembl chrNW_004955458:5,215,853...5,233,037 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:24036451) UniProt PMID:24036451 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694 		JBrowse link
G Ncl nucleolin involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004955453:4,154,627...4,164,253
Ensembl chrNW_004955453:4,154,627...4,164,253 		JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chrNW_004955478:6,863,203...6,891,549
Ensembl chrNW_004955478:6,863,635...6,892,743 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283)
(PMID:24036451) 		UniProt PMID:22368283 PMID:24036451 NCBI chrNW_004955559:1,390,823...1,395,550
Ensembl chrNW_004955559:1,391,314...1,396,329 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) FlyBase PMID:29065309 NCBI chrNW_004955405:41,314,978...41,329,988
Ensembl chrNW_004955405:41,314,978...41,329,979 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004955455:8,420,263...8,457,105
Ensembl chrNW_004955455:8,415,839...8,457,097 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955439:4,226,530...4,234,390
Ensembl chrNW_004955439:4,226,530...4,234,261 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004955451:17,294,163...17,302,807
Ensembl chrNW_004955451:17,294,251...17,302,746 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12628
    cellular process 12059
      metabolic process 7975
        macromolecule metabolic process 6527
          macromolecule biosynthetic process 4812
            gene expression 4478
              DNA-templated transcription 2413
                rRNA transcription 31
                  5S class rRNA transcription by RNA polymerase III 0
                  nucleolar large rRNA transcription by RNA polymerase I + 22
                  plastid rRNA transcription 0
Path 2
Term Annotations click to browse term
  biological_process 12628
    cellular process 12059
      metabolic process 7975
        primary metabolic process 6970
          nucleobase-containing compound metabolic process 3928
            nucleobase-containing compound biosynthetic process 3185
              nucleic acid biosynthetic process 2993
                RNA biosynthetic process 2900
                  DNA-templated transcription 2413
                    rRNA transcription 31
                      5S class rRNA transcription by RNA polymerase III 0
                      nucleolar large rRNA transcription by RNA polymerase I + 22
                      plastid rRNA transcription 0
paths to the root