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ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
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Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis


show annotations for term's descendants           Sort by:
rRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANG angiogenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:1,548,693...1,558,528
Ensembl chr14:19,614,950...19,615,393 		JBrowse link
G CAVIN1 caveolae associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,892,936...14,914,017
Ensembl chr17:15,117,091...15,139,223 		JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A acts_upstream_of_or_within ISO (PMID:18809582) MGI PMID:18809582 NCBI chr 9:21,803,862...21,831,322 JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,410,231...31,438,015
Ensembl chr12:31,668,708...31,693,839 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:21444791 RGD:11535018 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656 		JBrowse link
G NPM3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:98,384,024...98,386,131
Ensembl chr10:101,855,759...101,857,845 		JBrowse link
G POLR1A RNA polymerase I subunit A ISO RGD PMID:9422795 RGD:2312782 NCBI chr2A:86,070,160...86,157,606
Ensembl chr2A:87,622,466...87,705,357 		JBrowse link
G POLR1B RNA polymerase I subunit B acts_upstream_of_or_within ISO
IEA 		RGD
Ensembl		 PMID:9422795 GO_REF:0000107 RGD:2312782 NCBI chr2A:89,478,133...89,516,559
Ensembl chr2A:113,555,452...113,590,377 		JBrowse link
G POLR1G RNA polymerase I subunit G acts_upstream_of_or_within ISO (PMID:15226435) MGI PMID:15226435 NCBI chr19:42,354,919...42,359,537
Ensembl chr19:50,951,038...50,953,826 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289 		JBrowse link
G SPIN1 spindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:59,466,550...59,558,773
Ensembl chr 9:87,513,819...87,606,183 		JBrowse link
G TOP1 DNA topoisomerase I ISO RGD PMID:3033639 RGD:2317069 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120 		JBrowse link
5S class rRNA transcription by RNA polymerase III term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF3C1 general transcription factor IIIC subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:27,830,280...27,919,020 JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:136,533,756...136,545,107
Ensembl chr 1:140,447,011...140,457,876 		JBrowse link
G LOC100974647 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,526,013...66,585,568
Ensembl chr10:69,077,456...69,114,194 		JBrowse link
G LOC100974858 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) UniProt PMID:27729611 NCBI chr19:44,739,739...44,751,303 JBrowse link
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:37,331,149...37,348,652
Ensembl chr 9:38,255,067...38,272,498 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:9,834,385...9,927,129
Ensembl chr2A:9,996,146...10,087,740 		JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chr 5:145,781,915...145,824,312
Ensembl chr 5:151,786,944...151,825,549 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) UniProt PMID:26089203 NCBI chr12:55,176,165...55,207,123 JBrowse link
G IPPK inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,737,324...63,793,348
Ensembl chr 9:91,808,757...91,864,773 		JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,410,231...31,438,015
Ensembl chr12:31,668,708...31,693,839 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841 		JBrowse link
G NCL nucleolin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:118,703,148...118,712,893
Ensembl chr2B:237,490,378...237,500,193 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:61,650,662...61,676,657
Ensembl chr17:66,849,998...66,875,775 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:46,459,855...46,465,882
Ensembl chr19:55,381,803...55,387,664 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:105,255,755...105,282,519
Ensembl chr12:108,652,024...108,679,503 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:44,703,720...44,784,948 JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 Ensembl chr 6:158,126,665...158,153,663 JBrowse link
G LOC103786072 DNA-directed RNA polymerases I and III subunit RPAC2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:8,910,717...8,913,420
Ensembl chr13:27,256,567...27,373,830 		JBrowse link
G POLR1F RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:20,369,819...20,383,414
Ensembl chr 7:19,692,639...19,703,338 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:32,263...41,992
Ensembl chr19:1,065,421...1,073,379 		JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18867
      metabolic process 12794
        macromolecule metabolic process 10877
          macromolecule biosynthetic process 8772
            gene expression 8363
              DNA-templated transcription 3283
                rRNA transcription 38
                  5S class rRNA transcription by RNA polymerase III 1
                  nucleolar large rRNA transcription by RNA polymerase I + 26
                  plastid rRNA transcription 0
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18867
      metabolic process 12794
        primary metabolic process 11190
          nucleobase-containing compound metabolic process 7097
            nucleobase-containing compound biosynthetic process 6210
              nucleic acid biosynthetic process 5955
                RNA biosynthetic process 5851
                  DNA-templated transcription 3283
                    rRNA transcription 38
                      5S class rRNA transcription by RNA polymerase III 1
                      nucleolar large rRNA transcription by RNA polymerase I + 26
                      plastid rRNA transcription 0
paths to the root