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ONTOLOGY REPORT - ANNOTATIONS

Term:snRNA transcription
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Accession:GO:0009301 term browser browse the term
Definition:The synthesis of small nuclear RNA (snRNA) from a DNA template.


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snRNA transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpap2 RNA polymerase II associated protein 2 involved_in ISO
IEA
ISS		 (PMID:22137580)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:22137580 GO_REF:0000024 GO_REF:0000107 NCBI chr14:2,109,044...2,187,343
Ensembl chr14:2,109,053...2,187,350 		JBrowse link
G Snapc2 small nuclear RNA activating complex, polypeptide 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:2,605,794...2,608,997
Ensembl chr12:2,605,810...2,608,999 		JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 involved_in ISO (PMID:24413172) RGD PMID:24413172 NCBI chr12:5,823,460...5,850,470
Ensembl chr12:5,823,359...5,850,366 		JBrowse link
negative regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in ISO
IEA		 (PMID:12917378)
GO_REF:0000107		 RGD
Ensembl		 PMID:12917378 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936 		JBrowse link
positive regulation of snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO
ISS		 (PMID:28254838)
GO_REF:0000024		 RGD
UniProt		 PMID:28254838 GO_REF:0000024 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
G Mepce methylphosphate capping enzyme involved_in ISO (PMID:28254838) RGD PMID:28254838 NCBI chr12:18,911,796...18,916,515
Ensembl chr12:18,911,796...18,916,514 		JBrowse link
G Myod1 myogenic differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6148658|PMID:25217815)		 UniProt
RGD		 PMID:25217815 GO_REF:0000024 MGI:6148658 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554 		JBrowse link
G Zfp143 zinc finger protein 143 involved_in ISO (PMID:9009278) RGD PMID:9009278 NCBI chr 1:164,109,041...164,144,902
Ensembl chr 1:164,109,116...164,144,902 		JBrowse link
snRNA transcription by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ell elongation factor for RNA polymerase II involved_in ISO
IBA		 (PMID:22195968), (PMID:23932780)
GO_REF:0000033
(MGI:5582153|PMID:22195968)		 RGD
GO_Central		 PMID:22195968 PMID:23932780 GO_REF:0000033 MGI:5582153 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 involved_in ISO
IBA		 (PMID:22195968)
GO_REF:0000033		 RGD
GO_Central		 PMID:22195968 GO_REF:0000033 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781 		JBrowse link
G Ell2l1 elongation factor for RNA polymerase II 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO
IBA
IEA
ISS		 (PMID:22195968)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:22195968 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Ice1 interactor of little elongation complex ELL subunit 1 involved_in ISO (PMID:22195968), (PMID:23932780) RGD PMID:22195968 PMID:23932780 NCBI chr 1:32,640,372...32,682,669
Ensembl chr 1:32,640,407...32,679,898 		JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 involved_in ISO
IBA		 (PMID:23932780)
GO_REF:0000033		 RGD
GO_Central		 PMID:23932780 GO_REF:0000033 NCBI chr 8:70,043,419...70,085,217
Ensembl chr 8:70,043,424...70,084,995 		JBrowse link
G Snapc1 small nuclear RNA activating complex, polypeptide 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:92,684,785...92,710,772
Ensembl chr 6:92,684,752...92,707,746 		JBrowse link
G Snapc3 small nuclear RNA activating complex, polypeptide 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:97,817,827...97,868,494
Ensembl chr 5:97,817,947...97,844,650 		JBrowse link
G Snapc4 small nuclear RNA activating complex, polypeptide 4 involved_in ISO
IBA		 (PMID:9418884)
GO_REF:0000033		 RGD
GO_Central		 PMID:9418884 GO_REF:0000033 NCBI chr 3:9,182,061...9,200,819
Ensembl chr 3:9,182,067...9,199,518 		JBrowse link
G Snapc5 small nuclear RNA activating complex, polypeptide 5 involved_in ISO (PMID:9732265) RGD PMID:9732265 NCBI chr 8:64,677,204...64,680,769
Ensembl chr 8:64,677,205...64,681,964 		JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 involved_in ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 3:116,176,779...116,193,752
Ensembl chr 3:116,176,798...116,193,787 		JBrowse link
snRNA transcription by RNA polymerase III term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ell elongation factor for RNA polymerase II involved_in ISO (PMID:23932780) RGD PMID:23932780 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ice1 interactor of little elongation complex ELL subunit 1 involved_in ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 1:32,640,372...32,682,669
Ensembl chr 1:32,640,407...32,679,898 		JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 involved_in ISO
IBA		 (PMID:23932780)
GO_REF:0000033		 RGD
GO_Central		 PMID:23932780 GO_REF:0000033 NCBI chr 8:70,043,419...70,085,217
Ensembl chr 8:70,043,424...70,084,995 		JBrowse link
G Polr3b RNA polymerase III subunit B involved_in ISO (PMID:35637192) RGD PMID:35637192 NCBI chr 7:19,039,179...19,142,450
Ensembl chr 7:19,038,552...19,142,598 		JBrowse link
G Snapc1 small nuclear RNA activating complex, polypeptide 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:92,684,785...92,710,772
Ensembl chr 6:92,684,752...92,707,746 		JBrowse link
G Snapc3 small nuclear RNA activating complex, polypeptide 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:97,817,827...97,868,494
Ensembl chr 5:97,817,947...97,844,650 		JBrowse link
G Snapc4 small nuclear RNA activating complex, polypeptide 4 involved_in ISO
IBA		 (PMID:9418884)
GO_REF:0000033		 RGD
GO_Central		 PMID:9418884 GO_REF:0000033 NCBI chr 3:9,182,061...9,200,819
Ensembl chr 3:9,182,067...9,199,518 		JBrowse link
G Snapc5 small nuclear RNA activating complex, polypeptide 5 involved_in ISO (PMID:9732265) RGD PMID:9732265 NCBI chr 8:64,677,204...64,680,769
Ensembl chr 8:64,677,205...64,681,964 		JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 involved_in ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 3:116,176,779...116,193,752
Ensembl chr 3:116,176,798...116,193,787 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      macromolecule metabolic process 10146
        nucleic acid metabolic process 5148
          RNA metabolic process 4578
            snRNA metabolic process 54
              snRNA transcription 20
                snRNA transcription by RNA polymerase II + 16
                snRNA transcription by RNA polymerase III 9
Path 2
Term Annotations click to browse term
  biological_process 20115
    cellular process 18524
      cellular metabolic process 10293
        cellular biosynthetic process 7985
          macromolecule biosynthetic process 7442
            nucleic acid biosynthetic process 4419
              RNA biosynthetic process 4308
                DNA-templated transcription 3497
                  snRNA transcription 20
                    snRNA transcription by RNA polymerase II + 16
                    snRNA transcription by RNA polymerase III 9
paths to the root