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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoid
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Accession:GO:0009295 term browser browse the term
Definition:The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.
Synonyms:xref: Wikipedia:Nucleoid


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nucleoid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp1 single stranded DNA binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,634,844...68,645,112
Ensembl chr 4:68,634,929...68,645,172
JBrowse link
mitochondrial nucleoid term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadvl acyl-CoA dehydrogenase, very long chain ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr10:56,619,321...56,624,468
Ensembl chr10:56,619,303...56,624,526
JBrowse link
G Atad3a ATPase family, AAA domain containing 3A IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:173,189,590...173,209,809
Ensembl chr 5:173,189,592...173,209,768
JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr 7:2,504,708...2,511,748
Ensembl chr 7:2,504,695...2,511,749
JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 8:70,789,137...70,843,133
Ensembl chr 8:70,789,256...70,843,123
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 9:74,113,437...74,236,274
Ensembl chr 9:74,124,016...74,236,274
JBrowse link
G Dbt dihydrolipoamide branched chain transacylase E2 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 2:219,563,783...219,592,651
Ensembl chr 2:219,563,783...219,592,650
JBrowse link
G Ddx28 DEAD-box helicase 28 ISO (PMID:18063578), (PMID:25683715) RGD PMID:18063578 PMID:25683715 NCBI chr19:37,988,423...37,990,353
Ensembl chr19:37,988,423...37,990,353
JBrowse link
G Dhx30 DExH-box helicase 30 ISS
ISO
GO_REF:0000024
(PMID:18063578), (PMID:25683715)
UniProt
RGD
PMID:18063578 PMID:25683715 GO_REF:0000024 NCBI chr 8:118,160,315...118,194,674
Ensembl chr 8:118,160,299...118,187,791
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 ISO (PMID:16531398) RGD PMID:16531398 NCBI chr10:11,059,701...11,085,186
Ensembl chr10:11,060,313...11,085,210
JBrowse link
G Elac2 elaC ribonuclease Z 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:5582978|PMID:24703694)
GO_REF:0000024
(PMID:24703694)
Ensembl
RGD
UniProt
PMID:24703694 GO_REF:0000024 GO_REF:0000107 MGI:5582978 NCBI chr10:51,478,378...51,501,167
Ensembl chr10:51,478,378...51,501,165
JBrowse link
G Fastkd2 FAST kinase domains 2 ISO
IEA
ISS
(PMID:25683715)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:70,448,386...70,471,420
Ensembl chr 9:70,450,444...70,470,550
JBrowse link
G Fastkd5 FAST kinase domains 5 ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:123,154,263...123,170,615 JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 ISO (PMID:25683715) RGD PMID:25683715 NCBI chr14:21,039,990...21,056,413
Ensembl chr14:21,039,990...21,056,452
JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 6:27,589,840...27,628,921
Ensembl chr 6:27,589,657...27,629,175
JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr 6:27,555,408...27,589,539
Ensembl chr 6:27,555,412...27,582,995
JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 ISO
ISS
(PMID:24703694)
(MGI:5582978|PMID:24703694)
GO_REF:0000024
RGD
UniProt
PMID:24703694 GO_REF:0000024 MGI:5582978 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr18:27,731,072...27,749,235
Ensembl chr18:27,731,072...27,749,235
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 9:10,428,853...10,441,180
Ensembl chr 9:10,428,853...10,441,177
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 6:7,984,043...8,066,874
Ensembl chr 6:7,984,019...8,066,868
JBrowse link
G Lrrc59 leucine rich repeat containing 59 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr10:82,352,390...82,367,047
Ensembl chr10:82,352,390...82,367,047
JBrowse link
G Mpg N-methylpurine-DNA glycosylase IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:15,661,768...15,667,995
Ensembl chr10:15,661,608...15,668,022
JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 4:27,365,310...27,372,374
Ensembl chr 4:27,365,376...27,372,372
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 ISS
ISO
GO_REF:0000024
(MGI:3848074|PMID:19366608)
UniProt
RGD
PMID:19366608 GO_REF:0000024 MGI:3848074 NCBI chr 7:24,638,208...24,649,599
Ensembl chr 7:24,638,208...24,648,255
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO
IBA
(PMID:18063578)
PMID:21873635
RGD PMID:18063578, PMID:21873635 RGD:13792537 NCBI chr10:65,781,994...65,790,833
Ensembl chr10:65,780,494...65,790,272
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO
ISS
(PMID:18063578)
GO_REF:0000024
RGD
UniProt
PMID:18063578 GO_REF:0000024 NCBI chr 1:141,172,117...141,188,893
Ensembl chr 1:141,172,531...141,188,031
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit ISO (PMID:18063578), (PMID:26123486) RGD PMID:18063578 PMID:26123486 NCBI chr10:94,968,836...94,979,259
Ensembl chr10:94,968,836...94,979,259
JBrowse link
G Polrmt RNA polymerase mitochondrial ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 7:12,840,907...12,851,153
Ensembl chr 7:12,840,938...12,851,153
JBrowse link
G Prorp protein only RNase P catalytic subunit ISO
IBA
(MGI:5582978|PMID:24703694)
PMID:21873635
RGD PMID:24703694, PMID:21873635 MGI:5582978, RGD:13792537 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G RGD1561671 similar to RIKEN cDNA 2900010M23 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:11,915,347...11,916,026
Ensembl chr17:11,915,413...11,916,026
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
G Slc25a5 solute carrier family 25 member 5 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr  X:123,404,570...123,407,637
Ensembl chr  X:123,404,518...123,407,645
JBrowse link
G Sod2 superoxide dismutase 2 IDA RGD PMID:19228881 RGD:2306615 NCBI chr 1:47,914,757...47,921,587
Ensembl chr 1:47,914,759...47,921,587
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 ISO
IBA
IEA
(PMID:18063578)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:18063578, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 4:68,634,844...68,645,112
Ensembl chr 4:68,634,929...68,645,172
JBrowse link
G Supv3l1 Suv3 like RNA helicase ISO
IEA
(PMID:18063578)
GO_REF:0000044
RGD
UniProt
PMID:18063578 GO_REF:0000044 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
G Tefm transcription elongation factor, mitochondrial ISO
IEA
ISS
(PMID:21278163)
GO_REF:0000044
GO_REF:0000024
RGD
UniProt
PMID:21278163 GO_REF:0000024 GO_REF:0000044 NCBI chr10:67,476,006...67,478,830
Ensembl chr10:67,475,968...67,479,077
JBrowse link
G Tert telomerase reverse transcriptase ISO (PMID:21937513) RGD PMID:21937513 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
G Tfam transcription factor A, mitochondrial ISS
ISO
GO_REF:0000024
(MGI:5582978|PMID:24703694)
(PMID:18063578), (PMID:24703694)
UniProt
RGD
PMID:18063578 PMID:24703694 GO_REF:0000024 MGI:5582978 NCBI chr20:18,594,057...18,606,106
Ensembl chr20:18,594,037...18,606,151
JBrowse link
G Tfb1m transcription factor B1, mitochondrial ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr 1:44,433,116...44,474,674
Ensembl chr 1:44,433,116...44,474,674
JBrowse link
G Tfb2m transcription factor B2, mitochondrial ISO (PMID:18063578) RGD PMID:18063578 NCBI chr13:97,820,493...97,838,275
Ensembl chr13:97,820,493...97,838,228
JBrowse link
G Top1mt DNA topoisomerase I mitochondrial ISO
IBA
(PMID:18063578)
PMID:21873635
RGD PMID:18063578, PMID:21873635 RGD:13792537 NCBI chr 7:116,688,801...116,714,421
Ensembl chr 7:116,688,701...116,712,387
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ISO
ISS
(PMID:24703694)
GO_REF:0000024
RGD
UniProt
PMID:24703694 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Tufm Tu translation elongation factor, mitochondrial ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 1:197,903,582...197,907,189
Ensembl chr 1:197,903,582...197,907,189
JBrowse link
G Twnk twinkle mtDNA helicase ISO (PMID:18063578), (PMID:18971204) RGD PMID:18063578 PMID:18971204 NCBI chr 1:264,756,060...264,762,892
Ensembl chr 1:264,756,499...264,762,892
JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 ISO
ISS
(PMID:19643811)
GO_REF:0000024
RGD
UniProt
PMID:19643811 GO_REF:0000024 NCBI chr20:5,712,200...5,723,902
Ensembl chr20:5,712,203...5,723,902
JBrowse link
G Vdac1 voltage-dependent anion channel 1 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr10:37,724,915...37,752,827
Ensembl chr10:37,724,915...37,752,826
JBrowse link
G Vdac2 voltage-dependent anion channel 2 ISO (PMID:18063578) RGD PMID:18063578 NCBI chr15:2,634,622...2,648,548
Ensembl chr15:2,634,624...2,648,551
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      nucleoid 48
        bacterial nucleoid + 0
        mitochondrial nucleoid + 48
        plastid nucleoid + 0
        single-stranded DNA-binding protein complex 0
        virion nucleoid 0
paths to the root