Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoid
go back to main search page
Accession:GO:0009295 term browser browse the term
Definition:The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.
Synonyms:xref: Wikipedia:Nucleoid



show annotations for term's descendants           Sort by:
 
nucleoid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp1 single stranded DNA binding protein 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
mitochondrial nucleoid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadvl acyl-CoA dehydrogenase, very long chain located_in ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr10:54,732,875...54,738,102
Ensembl chr10:54,732,469...54,738,075
JBrowse link
G Atad3a ATPase family, AAA domain containing 3A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:166,350,302...166,370,492
Ensembl chr 5:166,350,304...166,370,482
JBrowse link
G Atp5f1b ATP synthase F1 subunit beta located_in ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr 7:515,454...521,858
Ensembl chr 7:515,460...567,273
JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 8:65,805,460...65,845,643
Ensembl chr 8:65,805,511...65,845,082
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033
JBrowse link
G Dbt dihydrolipoamide branched chain transacylase E2 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 2:204,481,744...204,510,612
Ensembl chr 2:204,481,737...204,510,609
JBrowse link
G Ddx28 DEAD-box helicase 28 located_in ISO (PMID:18063578), (PMID:25683715) RGD PMID:18063578 PMID:25683715 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742
JBrowse link
G Dhx30 DExH-box helicase 30 located_in ISS
ISO
GO_REF:0000024
(PMID:18063578), (PMID:25683715)
UniProt
RGD
PMID:18063578 PMID:25683715 GO_REF:0000024 NCBI chr 8:110,064,751...110,096,954
Ensembl chr 8:110,064,752...110,097,381
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 located_in ISO
IEA
(PMID:19487465)
GO_REF:0000107
RGD
Ensembl
PMID:19487465 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598 JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 located_in ISO
IEA
(PMID:16531398)
GO_REF:0000107
RGD
Ensembl
PMID:16531398 GO_REF:0000107 NCBI chr10:10,855,510...10,880,175
Ensembl chr10:10,854,732...10,880,161
JBrowse link
G Elac2 elaC ribonuclease Z 2 located_in IEA
ISO
ISS
GO_REF:0000044
(MGI:5582978|PMID:24703694)
GO_REF:0000024
(PMID:24703694)
UniProt
RGD
PMID:24703694 GO_REF:0000024 GO_REF:0000044 MGI:5582978 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614
JBrowse link
G Fastkd2 FAST kinase domains 2 located_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:25683715)
Ensembl
UniProt
RGD
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Fastkd5 FAST kinase domains 5 located_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:117,830,227...117,847,737 JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 located_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362
JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 6:26,187,969...26,227,605
Ensembl chr 6:26,187,956...26,227,869
JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta located_in IEA
ISO
GO_REF:0000107
(PMID:18063578)
Ensembl
RGD
PMID:18063578 GO_REF:0000107 NCBI chr 6:26,153,572...26,187,668
Ensembl chr 6:26,153,578...26,184,869
JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 located_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5582978|PMID:24703694)
GO_REF:0000024
(PMID:24703694)
Ensembl
RGD
UniProt
PMID:24703694 GO_REF:0000024 GO_REF:0000107 MGI:5582978 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 located_in ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr18:26,536,131...26,554,294
Ensembl chr18:26,535,798...26,554,292
JBrowse link
G Lonp1 lon peptidase 1, mitochondrial located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 9:1,447,444...1,459,771
Ensembl chr 9:1,447,447...1,459,771
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISO
IEA
(PMID:18063578)
GO_REF:0000107
RGD
Ensembl
PMID:18063578 GO_REF:0000107 NCBI chr 6:9,859,867...9,942,294
Ensembl chr 6:9,859,867...9,942,293
JBrowse link
G Lrrc59 leucine rich repeat containing 59 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr10:79,572,295...79,586,953
Ensembl chr10:79,572,317...79,602,533
JBrowse link
G Mpg N-methylpurine-DNA glycosylase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:15,396,246...15,402,528
Ensembl chr10:15,395,782...15,402,520
JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 located_in ISS
ISO
GO_REF:0000024
(MGI:3848074|PMID:19366608)
UniProt
RGD
PMID:19366608 GO_REF:0000024 MGI:3848074 NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 located_in
is_active_in
ISO
IBA
(PMID:18063578)
PMID:21873635
RGD PMID:18063578 PMID:21873635 RGD:13792537 NCBI chr10:63,408,766...63,417,605
Ensembl chr10:63,407,213...63,417,605
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit located_in ISO
ISS
(PMID:18063578)
GO_REF:0000024
RGD
UniProt
PMID:18063578 GO_REF:0000024 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit located_in ISO (PMID:18063578), (PMID:26123486) RGD PMID:18063578 PMID:26123486 NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008
JBrowse link
G Polrmt RNA polymerase mitochondrial located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Prorp protein only RNase P catalytic subunit located_in ISO (MGI:5582978|PMID:24703694) RGD PMID:24703694 MGI:5582978 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416
JBrowse link
G RGD1561671 similar to RIKEN cDNA 2900010M23 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:11,936,026...11,936,668
Ensembl chr17:11,936,099...11,936,668
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
JBrowse link
G Slc25a5 solute carrier family 25 member 5 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr  X:116,031,896...116,034,963
Ensembl chr  X:116,031,803...116,034,967
JBrowse link
G Sod2 superoxide dismutase 2 IDA RGD PMID:19228881 RGD:2306615 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 is_active_in
located_in
IBA
ISO
ISS
IEA
PMID:21873635
(PMID:18063578), (PMID:31550240)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18063578 PMID:31550240 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
G Supv3l1 Suv3 like RNA helicase located_in IEA
ISO
GO_REF:0000044
(PMID:18063578)
UniProt
RGD
PMID:18063578 GO_REF:0000044 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054
JBrowse link
G Tefm transcription elongation factor, mitochondrial located_in
is_active_in
IEA
IBA
ISS
ISO
GO_REF:0000044
PMID:21873635
GO_REF:0000024
(PMID:21278163)
UniProt
RGD
PMID:21278163 PMID:21873635 GO_REF:0000024 GO_REF:0000044, RGD:13792537 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
G Tert telomerase reverse transcriptase located_in ISO (PMID:21937513) RGD PMID:21937513 NCBI chr 1:29,637,213...29,659,509
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
G Tfam transcription factor A, mitochondrial located_in ISS
ISO
GO_REF:0000024
(MGI:5582978|PMID:24703694)
(PMID:18063578), (PMID:24703694)
UniProt
RGD
PMID:18063578 PMID:24703694 GO_REF:0000024 MGI:5582978 NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb1m transcription factor B1, mitochondrial located_in IEA
ISO
GO_REF:0000107
(PMID:18063578)
Ensembl
RGD
PMID:18063578 GO_REF:0000107 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
JBrowse link
G Tfb2m transcription factor B2, mitochondrial located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
JBrowse link
G Top1mt DNA topoisomerase I mitochondrial located_in
is_active_in
ISO
IBA
(PMID:18063578)
PMID:21873635
RGD PMID:18063578 PMID:21873635 RGD:13792537 NCBI chr 7:107,338,092...107,368,125
Ensembl chr 7:107,342,527...107,366,049
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit located_in ISO
ISS
(PMID:24703694)
GO_REF:0000024
RGD
UniProt
PMID:24703694 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Tufm Tu translation elongation factor, mitochondrial located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 1:181,073,788...181,077,395
Ensembl chr 1:181,073,788...181,077,395
JBrowse link
G Twnk twinkle mtDNA helicase located_in ISO (PMID:18063578), (PMID:18971204) RGD PMID:18063578 PMID:18971204 NCBI chr 1:243,867,568...243,874,802
Ensembl chr 1:243,868,330...243,874,802
JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 located_in ISO
ISS
(PMID:19643811)
GO_REF:0000024
RGD
UniProt
PMID:19643811 GO_REF:0000024 NCBI chr20:5,202,837...5,214,541
Ensembl chr20:5,202,837...5,214,164
JBrowse link
G Vdac1 voltage-dependent anion channel 1 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr10:36,532,306...36,559,642
Ensembl chr10:36,532,244...36,559,640
JBrowse link
G Vdac2 voltage-dependent anion channel 2 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr15:2,462,877...2,476,802
Ensembl chr15:2,463,056...2,476,553
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20009
    cellular anatomical entity 19717
      nucleoid 47
        bacterial nucleoid + 0
        mitochondrial nucleoid + 47
        plastid nucleoid + 0
        single-stranded DNA-binding protein complex 0
paths to the root