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ONTOLOGY REPORT - ANNOTATIONS

Term:2'-deoxyribonucleotide biosynthetic process
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Accession:GO:0009265 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide anabolism;   2'-deoxyribonucleotide biosynthesis;   2'-deoxyribonucleotide formation;   2'-deoxyribonucleotide synthesis

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2'-deoxyribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:815,401...848,749
Ensembl chrNW_004936498:815,399...848,793 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO (PMID:16376858)
(MGI:6810812|PMID:12578384)		 ComplexPortal PMID:12578384 PMID:16376858 MGI:6810812 NCBI chrNW_004936532:6,348,041...6,390,144 JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,354,387...41,401,308
Ensembl chrNW_004936470:41,354,287...41,401,317 		JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:4,560,078...5,023,780
Ensembl chrNW_004936521:4,557,971...5,023,800 		JBrowse link
G Dck deoxycytidine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:3,819,239...3,846,692
Ensembl chrNW_004936598:3,817,994...3,843,241 		JBrowse link
G Dguok deoxyguanosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:226,643...263,517
Ensembl chrNW_004936556:226,627...264,905 		JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12163459) Ensembl
MGI		 PMID:12163459 GO_REF:0000107 NCBI chrNW_004936521:4,560,078...5,023,780
Ensembl chrNW_004936521:4,557,971...5,023,800 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:4307347 GO_REF:0000107 RGD:5147877 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:192455 GO_REF:0000118 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
G Dtymk deoxythymidylate kinase acts_upstream_of_or_within
involved_in		 ISO (PMID:8845311)
(PMID:12614151)		 RGD
MGI
UniProt		 PMID:220041 PMID:8845311 PMID:12614151 RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727 		JBrowse link
G Tyms thymidylate synthetase involved_in ISO
IEA		 RGD
Ensembl
TreeGrafter
InterPro		 PMID:9894005 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
G Dtymk deoxythymidylate kinase ISO RGD PMID:220041 RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
G Tbpl1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11861477) Ensembl
MGI		 PMID:11861477 GO_REF:0000107 NCBI chrNW_004936560:1,797,791...1,830,199
Ensembl chrNW_004936560:1,797,333...1,830,188 		JBrowse link
G Tyms thymidylate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:192455 GO_REF:0000118 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
TreeGrafter
UniProt
InterPro		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
G LOC101969523 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:8,287,036...8,287,704 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      organic substance metabolic process 9204
        carbohydrate derivative metabolic process 987
          deoxyribonucleotide metabolic process 42
            deoxyribonucleotide biosynthetic process 15
              2'-deoxyribonucleotide biosynthetic process 15
                purine deoxyribonucleotide biosynthetic process + 4
                pyrimidine deoxyribonucleotide biosynthetic process + 8
Path 2
Term Annotations click to browse term
  biological_process 15969
    metabolic process 9630
      organic substance metabolic process 9204
        organic cyclic compound metabolic process 5206
          nucleobase-containing compound metabolic process 4756
            nucleobase-containing small molecule metabolic process 583
              nucleoside phosphate metabolic process 523
                nucleoside phosphate biosynthetic process 223
                  nucleotide biosynthetic process 219
                    deoxyribonucleotide biosynthetic process 15
                      2'-deoxyribonucleotide biosynthetic process 15
                        purine deoxyribonucleotide biosynthetic process + 4
                        pyrimidine deoxyribonucleotide biosynthetic process + 8
paths to the root