Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:2'-deoxyribonucleotide biosynthetic process
go back to main search page
Accession:GO:0009265 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a 2'-deoxyribonucleotide, a compound consisting of 2'-deoxyribonucleoside (a base linked to a 2'-deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: 2'-deoxyribonucleotide anabolism;   2'-deoxyribonucleotide biosynthesis;   2'-deoxyribonucleotide formation;   2'-deoxyribonucleotide synthesis


show annotations for term's descendants           Sort by:
2'-deoxyribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO
IEA 		(PMID:16376858)
GO_REF:0000107
(PMID:12578384) 		RGD
Ensembl		 PMID:12578384 PMID:16376858 GO_REF:0000107 NCBI chr 1:166,235,904...166,260,206
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO (PMID:16376858)
(PMID:12578384) 		RGD PMID:12578384 PMID:16376858 NCBI chr 6:47,044,755...47,075,370
Ensembl chr 6:41,340,557...41,346,773 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in ISO
IEA 		(PMID:16376858)
GO_REF:0000107 		RGD
Ensembl		 PMID:16376858 GO_REF:0000107 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633 		JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in IEA
ISO 		GO_REF:0000107
(PMID:2835956) 		Ensembl
RGD		 PMID:2835956 GO_REF:0000107 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
G Dck deoxycytidine kinase involved_in IEA
ISO 		GO_REF:0000107
(PMID:8748457) 		Ensembl
RGD		 PMID:8748457 GO_REF:0000107 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Dguok deoxyguanosine kinase involved_in ISO
IEA 		(PMID:19221117)
GO_REF:0000107 		RGD
Ensembl		 PMID:19221117 GO_REF:0000107 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733 		JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within ISO
IEA 		(PMID:12163459)
GO_REF:0000107 		RGD
Ensembl		 PMID:12163459 GO_REF:0000107 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IDA
IEA
ISO 		GO_REF:0000107
(PMID:31201273) 		Ensembl
RGD		 PMID:31201273 PMID:4307347 GO_REF:0000107, RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO
IBA 		GO_REF:0000002
(PMID:8845311)
GO_REF:0000033
(PMID:12614151) 		InterPro
RGD
GO_Central		 PMID:8845311 PMID:12614151 PMID:220041 GO_REF:0000002 GO_REF:0000033, RGD:5133687 NCBI chr 9:101,762,899...101,771,733
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Dhfr dihydrofolate reductase acts_upstream_of_or_within ISO (PMID:22057276) RGD PMID:22057276 NCBI chr 2:25,320,895...25,346,004
Ensembl chr 2:23,586,031...23,613,713 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO
IEA 		(PMID:10952785), (PMID:15322254)
GO_REF:0000107 		RGD
Ensembl		 PMID:10952785 PMID:15322254 GO_REF:0000107 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:19513116)
(PMID:22057276) 		RGD PMID:19513116 PMID:22057276 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 acts_upstream_of_or_within ISO (PMID:22057276) RGD PMID:22057276 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IEA
ISO
IBA 		GO_REF:0000107
(PMID:22057276)
GO_REF:0000033
GO_REF:0000002
(PMID:11278511), (PMID:15093541), (PMID:8845352) 		Ensembl
RGD
GO_Central
InterPro		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1545055 NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:220041 GO_REF:0000033, RGD:5133687 NCBI chr 9:101,762,899...101,771,733
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (PMID:11861477) RGD PMID:11861477 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tyms thymidylate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:101,762,899...101,771,733
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000104
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA 		GO_REF:0000002
GO_REF:0000033
GO_REF:0000041 		InterPro
GO_Central
UniProt
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 Ensembl chr13:67,763,505...67,765,634 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        carbohydrate derivative metabolic process 1062
          deoxyribonucleotide metabolic process 48
            deoxyribonucleotide biosynthetic process 19
              2'-deoxyribonucleotide biosynthetic process 19
                purine deoxyribonucleotide biosynthetic process + 4
                pyrimidine deoxyribonucleotide biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 730
              nucleoside phosphate metabolic process 699
                nucleoside phosphate biosynthetic process 312
                  nucleotide biosynthetic process 224
                    deoxyribonucleotide biosynthetic process 19
                      2'-deoxyribonucleotide biosynthetic process 19
                        purine deoxyribonucleotide biosynthetic process + 4
                        pyrimidine deoxyribonucleotide biosynthetic process + 12
paths to the root