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ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribonucleotide catabolic process
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Accession:GO:0009264 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: deoxyribonucleotide breakdown;   deoxyribonucleotide catabolism;   deoxyribonucleotide degradation

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deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936587:1,555,534...1,665,217
Ensembl chrNW_004936587:1,555,531...1,665,289 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10681516) Ensembl
MGI
InterPro		 PMID:10681516 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936741:950,681...999,290
Ensembl chrNW_004936741:965,273...999,247 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (PMID:10720488) MGI PMID:10720488 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G LOC101966455 uricase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,213,940...1,232,214 JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:21,535,197...21,542,417
Ensembl chrNW_004936474:21,535,467...21,542,588 		JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:23,151,674...23,161,292 JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:1,762,814...1,824,501
Ensembl chrNW_004936493:1,762,869...1,823,238 		JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465)
(PMID:7592575)
(PMID:14607964), (PMID:9478961)
(PMID:7731963)		 MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:20,465,767...20,513,084
Ensembl chrNW_004936469:20,465,767...20,513,075 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:12,880,745...12,884,240
Ensembl chrNW_004936501:12,879,241...12,884,287 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO PMID:17234634 MGI PMID:17234634 RGD:8553712 NCBI chrNW_004936476:16,740,643...16,742,831
Ensembl chrNW_004936476:16,740,581...16,742,866 		JBrowse link
G Gda guanine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:8,191,925...8,279,806
Ensembl chrNW_004936503:8,192,049...8,278,790 		JBrowse link
G LOC101966455 uricase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,213,940...1,232,214 JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:21,535,197...21,542,417
Ensembl chrNW_004936474:21,535,467...21,542,588 		JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (PMID:5560407) MGI PMID:5560407 NCBI chrNW_004936600:2,828,277...2,892,795 JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:23,151,674...23,161,292 JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:1,762,814...1,824,501
Ensembl chrNW_004936493:1,762,869...1,823,238 		JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936565:1,380,981...1,389,908
Ensembl chrNW_004936565:1,381,655...1,389,048 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101965734 U8 snoRNA-decapping enzyme acts_upstream_of_or_within ISO (PMID:20081199) MGI PMID:20081199 NCBI chrNW_004936529:4,825,277...4,827,011
Ensembl chrNW_004936529:4,825,189...4,826,886 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Tymp thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:315,609...320,356
Ensembl chrNW_004936629:315,610...319,076 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:15772079) Ensembl
UniProt		 PMID:15772079 GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240
Ensembl chrNW_004936501:12,879,241...12,884,287 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chrNW_004936741:950,681...999,290
Ensembl chrNW_004936741:965,273...999,247 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
InterPro
UniProt
TreeGrafter		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
G LOC101969523 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like involved_in IEA UniProt
InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:8,287,036...8,287,704 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936741:950,681...999,290
Ensembl chrNW_004936741:965,273...999,247 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      metabolic process 9980
        catabolic process 2417
          carbohydrate derivative catabolic process 245
            deoxyribonucleotide catabolic process 25
              purine deoxyribonucleotide catabolic process + 14
              pyrimidine deoxyribonucleotide catabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      metabolic process 9980
        primary metabolic process 8867
          nucleobase-containing compound metabolic process 4939
            nucleobase-containing small molecule metabolic process 596
              nucleoside phosphate metabolic process 570
                nucleotide metabolic process 433
                  deoxyribonucleotide metabolic process 42
                    deoxyribonucleotide catabolic process 25
                      purine deoxyribonucleotide catabolic process + 14
                      pyrimidine deoxyribonucleotide catabolic process + 11
paths to the root