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ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribonucleotide catabolic process
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Accession:GO:0009264 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: deoxyribonucleotide breakdown;   deoxyribonucleotide catabolism;   deoxyribonucleotide degradation

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deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624752:22,031,094...22,133,771
Ensembl chrNW_004624752:22,031,023...22,133,821 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10681516) InterPro
MGI		 PMID:10681516 GO_REF:0000002 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624849:4,031,421...4,098,326
Ensembl chrNW_004624849:4,052,050...4,098,149 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:23601106), (PMID:26294762) UniProt PMID:23601106 PMID:26294762 NCBI chrNW_004624842:2,591,016...2,649,746
Ensembl chrNW_004624842:2,591,148...2,647,742 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:17,691,790...17,695,027
Ensembl chrNW_004624758:17,691,803...17,694,945 		JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (PMID:10720488) MGI PMID:10720488 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883 		JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:22,147,077...22,168,337
Ensembl chrNW_004624764:22,151,246...22,168,322 		JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004624825:4,688,662...4,699,912
Ensembl chrNW_004624825:4,690,831...4,700,717 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chrNW_004624776:10,533,806...10,543,091
Ensembl chrNW_004624776:10,533,806...10,543,091 		JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (PMID:8064675) MGI PMID:8064675 NCBI chrNW_004624738:13,116,317...13,180,935
Ensembl chrNW_004624738:13,115,982...13,181,352 		JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7592575)
(PMID:7731963)
(PMID:7670465)
(PMID:14607964), (PMID:9478961)		 MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24141705) UniProt PMID:24141705 NCBI chrNW_004624842:2,591,016...2,649,746
Ensembl chrNW_004624842:2,591,148...2,647,742 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624763:20,618,515...20,680,790
Ensembl chrNW_004624763:20,620,380...20,680,782 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) MGI PMID:7744869 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chrNW_004624732:7,574,609...7,641,345
Ensembl chrNW_004624732:7,597,782...7,644,423 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:17,691,790...17,695,027
Ensembl chrNW_004624758:17,691,803...17,694,945 		JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO PMID:17234634 MGI PMID:17234634 RGD:8553712 NCBI chrNW_004624754:16,333,021...16,334,882
Ensembl chrNW_004624754:16,333,054...16,334,882 		JBrowse link
G Gda guanine deaminase involved_in ISO (PMID:8064675) MGI PMID:8064675 NCBI chrNW_004624736:836,283...914,616
Ensembl chrNW_004624736:836,286...914,409 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:22,147,077...22,168,337
Ensembl chrNW_004624764:22,151,246...22,168,322 		JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (PMID:5560407) MGI PMID:5560407 NCBI chrNW_004624831:2,374,341...2,468,819
Ensembl chrNW_004624831:2,371,804...2,529,726 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (PMID:16462750) MGI PMID:16462750 NCBI chrNW_004624776:10,533,806...10,543,091
Ensembl chrNW_004624776:10,533,806...10,543,091 		JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO (PMID:29895374), (PMID:30936145), (PMID:8226898) MGI PMID:8226898 PMID:29895374 PMID:30936145 NCBI chrNW_004624738:13,116,317...13,180,935
Ensembl chrNW_004624738:13,115,982...13,181,352 		JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004624748:6,807,667...6,824,477
Ensembl chrNW_004624748:6,804,740...6,823,757 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:2,591,016...2,649,746
Ensembl chrNW_004624842:2,591,148...2,647,742 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO (PMID:12077348) MGI PMID:12077348 NCBI chrNW_004624752:251,670...256,243
Ensembl chrNW_004624752:252,937...256,244 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 ISO (PMID:12077348)
(PMID:15772079)		 MGI
UniProt		 PMID:12077348 PMID:15772079 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624763:20,618,515...20,680,790
Ensembl chrNW_004624763:20,620,380...20,680,782 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) MGI PMID:12234672 NCBI chrNW_004624849:4,031,421...4,098,326
Ensembl chrNW_004624849:4,052,050...4,098,149 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) MGI PMID:14154460 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004624731:11,378,882...11,388,677
Ensembl chrNW_004624731:11,378,944...11,388,057 		JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:4,031,421...4,098,326
Ensembl chrNW_004624849:4,052,050...4,098,149 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      metabolic process 9450
        catabolic process 2288
          carbohydrate derivative catabolic process 225
            deoxyribonucleotide catabolic process 20
              purine deoxyribonucleotide catabolic process + 12
              pyrimidine deoxyribonucleotide catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      metabolic process 9450
        primary metabolic process 8379
          nucleobase-containing compound metabolic process 4594
            nucleobase-containing small molecule metabolic process 563
              nucleoside phosphate metabolic process 537
                nucleotide metabolic process 412
                  deoxyribonucleotide metabolic process 37
                    deoxyribonucleotide catabolic process 20
                      purine deoxyribonucleotide catabolic process + 12
                      pyrimidine deoxyribonucleotide catabolic process + 8
paths to the root