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ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribonucleotide catabolic process
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Accession:GO:0009264 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: deoxyribonucleotide breakdown;   deoxyribonucleotide catabolism;   deoxyribonucleotide degradation


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deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:137,731,093...137,814,894
Ensembl chr 6:137,731,544...137,834,338 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic acts_upstream_of_or_within IDA (PMID:10681516) MGI PMID:10681516 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Samhd1 SAM domain and HD domain, 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:156,939,454...156,977,016
Ensembl chr 2:156,939,453...156,977,185 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:70,815,264...70,820,128
Ensembl chr14:70,815,077...70,820,128 		JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in IMP (PMID:10720488) MGI PMID:10720488 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chr 4:123,095,026...123,119,128
Ensembl chr 4:123,095,297...123,110,068 		JBrowse link
G Pnp purine-nucleoside phosphorylase involved_in IMP
ISO		 (PMID:11783524)
(PMID:6771276)		 MGI PMID:6771276 PMID:11783524 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869 		JBrowse link
G Pnp2 purine-nucleoside phosphorylase 2 involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chr14:51,193,598...51,202,206
Ensembl chr14:51,193,449...51,202,206 		JBrowse link
G Uox urate oxidase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 5:147,251,794...147,259,250
Ensembl chr 5:147,251,794...147,259,250 		JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879 		JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA (PMID:8064675) MGI PMID:8064675 NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191 		JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP
IDA		 (PMID:7731963)
(PMID:7592575)
(PMID:14607964), (PMID:9478961)
(PMID:7670465)		 MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Samhd1 SAM domain and HD domain, 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:156,939,454...156,977,016
Ensembl chr 2:156,939,453...156,977,185 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO MGI GO_REF:0000008 NCBI chr 4:138,065,839...138,095,623
Ensembl chr 4:138,065,735...138,095,303 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:6301357) MGI PMID:6301357 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Upb1 ureidopropionase, beta involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IDA (PMID:7744869) MGI PMID:7744869 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chr 2:58,456,329...58,685,858
Ensembl chr 2:58,457,310...58,682,983 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:126,856,131...126,859,839
Ensembl chr 7:126,856,131...126,859,881 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:70,815,264...70,820,128
Ensembl chr14:70,815,077...70,820,128 		JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO (PMID:17234634) MGI PMID:17234634 NCBI chr17:46,807,715...46,810,544
Ensembl chr17:46,807,637...46,810,550 		JBrowse link
G Gda guanine deaminase involved_in IDA (PMID:8064675) MGI PMID:8064675 NCBI chr19:21,368,671...21,450,025
Ensembl chr19:21,368,671...21,450,809 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:10681516) MGI PMID:10681516 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chr 4:123,095,026...123,119,128
Ensembl chr 4:123,095,297...123,110,068 		JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in IDA (PMID:5560407) MGI PMID:5560407 NCBI chr19:46,873,829...47,003,613
Ensembl chr19:46,871,756...47,003,592 		JBrowse link
G Pnp purine-nucleoside phosphorylase involved_in IMP
ISO		 (PMID:11783524) MGI PMID:11783524 GO_REF:0000008 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869 		JBrowse link
G Uox urate oxidase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060 		JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 5:147,251,794...147,259,250
Ensembl chr 5:147,251,794...147,259,250 		JBrowse link
G Urah urate (5-hydroxyiso-) hydrolase involved_in IDA (PMID:16462750) MGI PMID:16462750 NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879 		JBrowse link
G Xdh xanthine dehydrogenase involved_in IDA (PMID:29895374), (PMID:30936145), (PMID:8226898) MGI PMID:8226898 PMID:29895374 PMID:30936145 NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191 		JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr14:73,756,320...73,785,682
Ensembl chr14:73,756,317...73,785,682 		JBrowse link
G Samhd1 SAM domain and HD domain, 1 involved_in ISO
IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:156,939,454...156,977,016
Ensembl chr 2:156,939,453...156,977,185 		JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 acts_upstream_of_or_within IGI (PMID:20081199) MGI PMID:20081199 NCBI chr 9:105,006,531...105,010,332
Ensembl chr 9:105,006,102...105,009,023 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:8083224) MGI PMID:8083224 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO MGI GO_REF:0000008 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:6301357) MGI PMID:6301357 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Tymp thymidine phosphorylase involved_in IMP (PMID:12077348) MGI PMID:12077348 NCBI chr15:89,255,834...89,261,282
Ensembl chr15:89,256,134...89,261,242 		JBrowse link
G Upb1 ureidopropionase, beta involved_in ISO (PMID:15385443) MGI PMID:15385443 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IMP (PMID:12077348)
(PMID:15772079)		 MGI
UniProt		 PMID:12077348 PMID:15772079 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chr 7:126,856,131...126,859,839
Ensembl chr 7:126,856,131...126,859,881 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:10681516) MGI PMID:10681516 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within IDA (PMID:12234672) MGI PMID:12234672 NCBI chr11:59,730,233...59,767,359
Ensembl chr11:59,730,273...59,771,794 		JBrowse link
G Upb1 ureidopropionase, beta involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IDA (PMID:14154460) MGI PMID:14154460 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA
IBA		 RGD
Ensembl
GO_Central		 PMID:1315924 PMID:3032103 GO_REF:0000033 GO_REF:0000096 GO_REF:0000107 RGD:2300191 RGD:2301218 NCBI chr 2:125,089,168...125,100,969
Ensembl chr 2:125,089,110...125,100,528 		JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:59,730,233...59,767,359
Ensembl chr11:59,730,273...59,771,794 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        catabolic process 2901
          carbohydrate derivative catabolic process 278
            deoxyribonucleotide catabolic process 28
              purine deoxyribonucleotide catabolic process + 16
              pyrimidine deoxyribonucleotide catabolic process + 12
Path 2
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        primary metabolic process 10275
          nucleobase-containing compound metabolic process 5755
            nucleobase-containing small molecule metabolic process 712
              nucleoside phosphate metabolic process 682
                nucleotide metabolic process 530
                  deoxyribonucleotide metabolic process 49
                    deoxyribonucleotide catabolic process 28
                      purine deoxyribonucleotide catabolic process + 16
                      pyrimidine deoxyribonucleotide catabolic process + 12
paths to the root