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ONTOLOGY REPORT - ANNOTATIONS


Term:isopentenyl diphosphate biosynthetic process
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Accession:GO:0009240 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
Synonyms:exact_synonym: IPP biosynthesis;   IPP biosynthetic process;   isopentenyl diphosphate anabolism;   isopentenyl diphosphate biosynthesis;   isopentenyl diphosphate formation;   isopentenyl diphosphate synthesis;   isopentenyl pyrophosphate biosynthesis;   isopentenyl pyrophosphate biosynthetic process



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isopentenyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idi1 isopentenyl-diphosphate delta isomerase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,629,592...61,637,357
Ensembl chr17:61,629,594...61,637,357
JBrowse link
G LOC102551575 isopentenyl-diphosphate delta-isomerase 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,504,294...61,507,015
Ensembl chr17:61,504,535...61,507,015
JBrowse link
G LOC120097764 isopentenyl-diphosphate delta-isomerase 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,338,622...61,349,795
Ensembl chr17:61,347,251...61,349,795
JBrowse link
G RGD1564347 similar to isopentenyl diphosphate delta-isomerase type 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,372,853...61,386,459
Ensembl chr17:61,373,678...61,386,454
JBrowse link
G RGD1564999 similar to isopentenyl-diphosphate delta isomerase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:61,518,138...61,535,484
Ensembl chr17:61,519,390...61,531,603
JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate diphosphate decarboxylase involved_in IDA
IBA
IEA
PMID:21873635
GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
RGD
PMID:197206 PMID:21873635 GO_REF:0000002 GO_REF:0000104, RGD:2316852, RGD:13792537 NCBI chr19:50,496,366...50,506,389
Ensembl chr19:50,496,367...50,507,971
JBrowse link
G Mvk mevalonate kinase involved_in IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt
RGD
PMID:197206 PMID:21873635 GO_REF:0000041, RGD:2316852, RGD:13792537 NCBI chr12:42,141,391...42,158,858
Ensembl chr12:42,141,384...42,158,882
JBrowse link
G Pmvk phosphomevalonate kinase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt
RGD
PMID:197206 PMID:21873635 GO_REF:0000041, RGD:2316852, RGD:13792537 NCBI chr 2:174,876,586...174,886,365
Ensembl chr 2:174,876,657...174,886,364
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19896
    metabolic process 12209
      biosynthetic process 6286
        cellular biosynthetic process 5818
          isoprenoid biosynthetic process 42
            isopentenyl diphosphate biosynthetic process 8
              isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
              isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
Path 2
Term Annotations click to browse term
  biological_process 19896
    metabolic process 12209
      cellular metabolic process 9628
        phosphorus metabolic process 2877
          organophosphate metabolic process 947
            phospholipid metabolic process 382
              isopentenyl diphosphate metabolic process 9
                isopentenyl diphosphate biosynthetic process 8
                  isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
                  isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
paths to the root