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ONTOLOGY REPORT - ANNOTATIONS


Term:isopentenyl diphosphate biosynthetic process
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Accession:GO:0009240 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
Synonyms:exact_synonym: IPP biosynthesis;   IPP biosynthetic process;   isopentenyl diphosphate anabolism;   isopentenyl diphosphate biosynthesis;   isopentenyl diphosphate formation;   isopentenyl diphosphate synthesis;   isopentenyl pyrophosphate biosynthesis;   isopentenyl pyrophosphate biosynthetic process



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isopentenyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000062441 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr17:61,602,519...61,608,185 JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr17:61,629,592...61,637,357
Ensembl chr17:61,629,594...61,637,357
JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr17:61,331,385...61,334,987
Ensembl chr17:61,331,669...61,334,285
JBrowse link
G Idi2l2 isopentenyl-diphosphate delta isomerase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:61,372,853...61,386,459
Ensembl chr17:61,373,678...61,386,454
JBrowse link
G Idi2l3 isopentenyl-diphosphate delta isomerase 2 like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:61,518,138...61,535,484
Ensembl chr17:61,519,390...61,531,603
JBrowse link
G LOC102551575 isopentenyl-diphosphate delta-isomerase 2-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:61,504,294...61,507,015
Ensembl chr17:61,504,535...61,507,015
JBrowse link
G LOC120097764 isopentenyl-diphosphate delta-isomerase 2-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:61,338,622...61,349,795
Ensembl chr17:61,347,251...61,349,795
Ensembl chr17:61,347,251...61,349,795
JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate diphosphate decarboxylase involved_in IDA
IEA
IBA
GO_REF:0000002
GO_REF:0000104
GO_REF:0000033
GO_REF:0000118
InterPro
UniProt
GO_Central
TreeGrafter
RGD
PMID:197206 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118, RGD:2316852 NCBI chr19:50,496,366...50,506,429
Ensembl chr19:50,496,367...50,507,971
JBrowse link
G Mvk mevalonate kinase involved_in IDA
IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
RGD
PMID:197206 GO_REF:0000033 GO_REF:0000041, RGD:2316852 NCBI chr12:42,141,391...42,158,893
Ensembl chr12:42,141,384...42,158,882
JBrowse link
G Pmvk phosphomevalonate kinase involved_in IDA
IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
RGD
PMID:197206 GO_REF:0000033 GO_REF:0000041, RGD:2316852 NCBI chr 2:174,876,586...174,886,365
Ensembl chr 2:174,876,657...174,886,364
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      biosynthetic process 8355
        cellular biosynthetic process 8211
          isoprenoid biosynthetic process 43
            isopentenyl diphosphate biosynthetic process 10
              isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
              isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      cellular metabolic process 10279
        phosphorus metabolic process 1934
          organophosphate metabolic process 1062
            phospholipid metabolic process 385
              isopentenyl diphosphate metabolic process 10
                isopentenyl diphosphate biosynthetic process 10
                  isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway + 0
                  isopentenyl diphosphate biosynthetic process, mevalonate pathway + 3
paths to the root