Welcome
{{ username}}
Message Center
{{ messageCount }} Messages
Go to Message Center
Watched Genes
{{$index + 1}}.
{{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Modify Subscription
Unsubscribe
Watched Ontology Terms
{{$index + 1}}.
{{ watchedTerm.term }} ({{watchedTerm.accId}})
Modify Subscription
Unsubscribe
{{gene.symbol}}:
{{ gene.description }}
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
{{ loginError }}
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be sent to {{ username }}
{{geneWatchAttr}}
Analyze
Gene
Strain
QTL
List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailble
Variant Visualizer (Genomic Variants)
unavailable
Gene Annotator (Functional Annotation)
Gene Annotator (Annotation Distribution)
Variant Visualizer (Genomic Variants)
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants) unavailble
Variant Visualizer (Damaging Variants)
unavailable
InterViewer (Protein-Protein Interactions)
GViewer (Genome Viewer)
Variant Visualizer (Damaging Variants)
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Gene Annotator (Annotation Comparison)
OLGA (Gene List Generator)
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
MOET (Multi-Ontology Enrichement)
GOLF (Gene-Ortholog Location Finder)
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
ONTOLOGY REPORT - ANNOTATIONS
{{ watchLinkText }}
Term:
thiamine diphosphate biosynthetic process
go back to main search page
Accession:
GO:0009229
browse the term
Definition:
The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
Synonyms:
exact_synonym:
TPP biosynthesis; TPP biosynthetic process; thiamin diphosphate biosynthetic process; thiamin pyrophosphate biosynthesis; thiamin pyrophosphate biosynthetic process; thiamine diphosphate anabolism; thiamine diphosphate biosynthesis; thiamine diphosphate formation; thiamine diphosphate synthesis; thiamine pyrophosphate biosynthesis; thiamine pyrophosphate biosynthetic process
GViewer not supported for the selected species.
show annotations for term's descendants Sort by:
symbol
object name
position
reference
evidence
↑ asc
↓ desc
Rat (5)
Mouse (5)
Human (5)
Chinchilla (5)
Bonobo (5)
Dog (5)
Squirrel (5)
Pig (5)
Green Monkey (4)
Naked Mole-rat (5)
All
Genes (5)
thiamine diphosphate biosynthetic process
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Slc19a2
solute carrier family 19 member 2
involved_in
ISO
(PMID:8186267)
MGI
PMID:8186267
NCBI chrNW_004624826:7,382,158...7,400,702
Ensembl chrNW_004624826:7,380,827...7,400,665
G
Slc19a3
solute carrier family 19 member 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004624843:1,900,240...1,916,610
G
Slc25a19
solute carrier family 25 member 19
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chrNW_004624801:5,086,925...5,114,171
G
Thtpa
thiamine triphosphatase
involved_in
ISO
(PMID:18276586)
MGI
PMID:18276586
NCBI chrNW_004624820:9,010,936...9,022,935
Ensembl chrNW_004624820:9,020,179...9,022,057
G
Tpk1
thiamin pyrophosphokinase 1
involved_in
IEA
UniProt
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118
NCBI chrNW_004624800:10,382,409...10,792,459
Ensembl chrNW_004624800:10,382,717...10,792,605
Term paths to the root
one shortest
all shortest
one longest
all longest
one shortest and longest
all
Path 1
Term
Annotations
biological_process
15114
cellular process
14727
metabolic process
9390
biosynthetic process
6502
organophosphate biosynthetic process
503
thiamine diphosphate biosynthetic process
5
negative regulation of thiamine diphosphate biosynthetic process
0
regulation of thiamine diphosphate biosynthetic process
+
0
Path 2
Term
Annotations
biological_process
15114
cellular process
14727
metabolic process
9390
small molecule metabolic process
1537
vitamin metabolic process
84
water-soluble vitamin metabolic process
46
thiamine-containing compound metabolic process
6
thiamine-containing compound biosynthetic process
5
thiamine diphosphate biosynthetic process
5
negative regulation of thiamine diphosphate biosynthetic process
0
regulation of thiamine diphosphate biosynthetic process
+
0