Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:thiamine diphosphate biosynthetic process
go back to main search page
Accession:GO:0009229 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
Synonyms:exact_synonym: TPP biosynthesis;   TPP biosynthetic process;   thiamin diphosphate biosynthetic process;   thiamin pyrophosphate biosynthesis;   thiamin pyrophosphate biosynthetic process;   thiamine diphosphate anabolism;   thiamine diphosphate biosynthesis;   thiamine diphosphate formation;   thiamine diphosphate synthesis;   thiamine pyrophosphate biosynthesis;   thiamine pyrophosphate biosynthetic process


show annotations for term's descendants           Sort by:
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,463,909...169,485,970
Ensembl chr 1:169,463,909...169,485,944 		JBrowse link
G SLC19A3 solute carrier family 19 member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:227,683,763...227,718,028
Ensembl chr 2:227,683,763...227,718,028 		JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,272,992...75,289,433
Ensembl chr17:75,272,981...75,289,510 		JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271 		JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA
IBA
IDA		 (PMID:11342111), (PMID:38547260) UniProt
InterPro
Ensembl
GO_Central		 PMID:11342111 PMID:38547260 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:144,451,941...144,836,437
Ensembl chr 7:144,451,941...144,836,395 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19789
    cellular process 18958
      metabolic process 13083
        biosynthetic process 9414
          organophosphate biosynthetic process 676
            thiamine diphosphate biosynthetic process 5
              negative regulation of thiamine diphosphate biosynthetic process 0
              regulation of thiamine diphosphate biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19789
    cellular process 18958
      metabolic process 13083
        biosynthetic process 9414
          small molecule biosynthetic process 672
            vitamin biosynthetic process 28
              water-soluble vitamin biosynthetic process 15
                thiamine-containing compound biosynthetic process 5
                  thiamine diphosphate biosynthetic process 5
                    negative regulation of thiamine diphosphate biosynthetic process 0
                    regulation of thiamine diphosphate biosynthetic process + 0
paths to the root