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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleotide-sugar biosynthetic process
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Accession:GO:0009226 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms:exact_synonym: nucleotide-sugar anabolism;   nucleotide-sugar biosynthesis;   nucleotide-sugar formation;   nucleotide-sugar synthesis


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'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfus GDP-L-fucose synthase involved_in ISO
IEA		 (PMID:9525924)
GO_REF:0000041		 RGD
UniProt		 PMID:9525924 GO_REF:0000041 NCBI chr 7:107,612,087...107,617,005
Ensembl chr 7:107,612,094...107,616,948 		JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase involved_in ISO
IBA
ISS
IEA		 (PMID:9525924)
PMID:21873635
GO_REF:0000024
GO_REF:0000041		 RGD
UniProt		 PMID:9525924 PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:13792537 NCBI chr17:32,095,315...32,621,975
Ensembl chr17:32,095,386...32,621,961 		JBrowse link
GDP-L-fucose salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase involved_in ISO
IBA		 (PMID:30503518)
PMID:21873635		 RGD PMID:30503518 PMID:21873635 RGD:13792537 NCBI chr19:38,849,130...38,874,497
Ensembl chr19:38,854,762...38,874,418 		JBrowse link
GDP-mannose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmppb GDP-mannose pyrophosphorylase B involved_in ISO
IBA		 (PMID:26310427)
PMID:21873635		 RGD PMID:26310427 PMID:21873635 RGD:13792537 NCBI chr 8:108,737,429...108,740,437
Ensembl chr 8:108,693,060...108,767,286 		JBrowse link
G LOC120093860 phosphomannomutase 1-like involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:93,489,893...93,490,745
Ensembl chr 7:93,489,958...93,490,745 		JBrowse link
G Mpi mannose phosphate isomerase involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000041
(MGI:5523713|PMID:24218558)
PMID:21873635		 UniProt
RGD		 PMID:24218558 PMID:21873635 GO_REF:0000041 MGI:5523713, RGD:13792537 NCBI chr 8:57,947,883...57,956,205
Ensembl chr 8:57,947,893...57,956,150 		JBrowse link
G Pmm1 phosphomannomutase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:113,466,632...113,477,004
Ensembl chr 7:113,466,632...113,477,022 		JBrowse link
G Pmm2 phosphomannomutase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:6,961,521...6,982,913
Ensembl chr10:6,961,709...6,983,098 		JBrowse link
UDP-D-xylose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uxs1 UDP-glucuronate decarboxylase 1 involved_in IEA
ISO		 GO_REF:0000041
(PMID:22810237), (PMID:25521717)		 UniProt
RGD		 PMID:22810237 PMID:25521717 GO_REF:0000041 NCBI chr 9:653,740...731,121
Ensembl chr 9:653,659...756,334 		JBrowse link
UDP-glucuronate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugdh UDP-glucose 6-dehydrogenase involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:27966912)		 UniProt
RGD		 PMID:27966912 GO_REF:0000024 GO_REF:0000041 NCBI chr14:42,848,704...42,872,351
Ensembl chr14:42,848,854...42,872,354 		JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07059877.1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr 4:41,548,914...41,549,455 JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IEA
ISO
ISS		 GO_REF:0000041
(PMID:26887390)
GO_REF:0000024		 UniProt
RGD		 PMID:26887390 GO_REF:0000024 GO_REF:0000041 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471 		JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329 		JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000041		 RGD
UniProt		 PMID:26887390 GO_REF:0000041 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486 		JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000041		 RGD
UniProt		 PMID:26887390 GO_REF:0000041 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739 		JBrowse link
G Pgm3 phosphoglucomutase 3 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 PMID:21873635
MGI:3758645 (MGI:3723540|PMID:17548465)
GO_REF:0000041
(PMID:24589341)		 RGD
UniProt		 PMID:17548465 PMID:24589341 PMID:21873635 GO_REF:0000041 MGI:3723540, RGD:13792537 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469 		JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,172,335...8,180,505
Ensembl chr 3:8,173,216...8,180,443 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      small molecule metabolic process 1918
        nucleobase-containing small molecule metabolic process 684
          nucleotide-sugar metabolic process 38
            nucleotide-sugar biosynthetic process 19
              ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
              CMP-N-acetylneuraminate biosynthetic process 0
              CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              GDP-D-rhamnose biosynthetic process 0
              GDP-L-fucose biosynthetic process + 3
              GDP-L-galactose biosynthetic process 0
              GDP-mannose biosynthetic process + 5
              UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
              UDP-D-apiose biosynthetic process 0
              UDP-D-galacturonate biosynthetic process 0
              UDP-D-xylose biosynthetic process 1
              UDP-L-arabinose biosynthetic process 0
              UDP-N-acetylgalactosamine biosynthetic process 0
              UDP-N-acetylglucosamine biosynthetic process + 9
              UDP-galactose biosynthetic process 0
              UDP-glucuronate biosynthetic process 1
              UDP-rhamnose biosynthetic process 0
              dTDP-mannose biosynthetic process 0
              dTDP-rhamnose biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      organic substance metabolic process 10895
        organic cyclic compound metabolic process 6033
          nucleobase-containing compound metabolic process 5539
            nucleobase-containing small molecule metabolic process 684
              nucleotide-sugar metabolic process 38
                nucleotide-sugar biosynthetic process 19
                  ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
                  CMP-N-acetylneuraminate biosynthetic process 0
                  CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
                  GDP-D-rhamnose biosynthetic process 0
                  GDP-L-fucose biosynthetic process + 3
                  GDP-L-galactose biosynthetic process 0
                  GDP-mannose biosynthetic process + 5
                  UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
                  UDP-D-apiose biosynthetic process 0
                  UDP-D-galacturonate biosynthetic process 0
                  UDP-D-xylose biosynthetic process 1
                  UDP-L-arabinose biosynthetic process 0
                  UDP-N-acetylgalactosamine biosynthetic process 0
                  UDP-N-acetylglucosamine biosynthetic process + 9
                  UDP-galactose biosynthetic process 0
                  UDP-glucuronate biosynthetic process 1
                  UDP-rhamnose biosynthetic process 0
                  dTDP-mannose biosynthetic process 0
                  dTDP-rhamnose biosynthetic process 0
paths to the root