Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleotide-sugar biosynthetic process
go back to main search page
Accession:GO:0009226 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms:exact_synonym: nucleotide-sugar anabolism;   nucleotide-sugar biosynthesis;   nucleotide-sugar formation;   nucleotide-sugar synthesis
 xref: Reactome:R-HSA-173599 "Formation of the active cofactor, UDP-glucuronate"


show annotations for term's descendants           Sort by:
nucleotide-sugar biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfus GDP-L-fucose synthase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:107,612,087...107,617,005
Ensembl chr 7:107,612,094...107,616,948 		JBrowse link
'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfus GDP-L-fucose synthase involved_in ISO
IEA		 (PMID:9525924)
GO_REF:0000107
MGI:2651890 (PMID:12186857)
GO_REF:0000041		 RGD
Ensembl
UniProt		 PMID:9525924 PMID:12186857 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:107,612,087...107,617,005
Ensembl chr 7:107,612,094...107,616,948 		JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase involved_in ISO
IEA
IBA
ISS		 (PMID:9525924)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
GO_REF:0000041		 RGD
Ensembl
GO_Central
UniProt		 PMID:9525924 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr17:32,095,315...32,621,975
Ensembl chr17:32,095,386...32,621,961 		JBrowse link
G Slc35c1 solute carrier family 35 member C1 involved_in ISO MGI:3709989 (PMID:17276979) RGD PMID:17276979 NCBI chr 3:78,421,925...78,429,603
Ensembl chr 3:78,421,933...78,428,520 		JBrowse link
CMP-N-acetylneuraminate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmas cytidine monophosphate N-acetylneuraminic acid synthetase involved_in IEA
ISO		 GO_REF:0000107
MGI:6281181 (PMID:30382946)
(PMID:31121216)		 Ensembl
RGD		 PMID:30382946 PMID:31121216 GO_REF:0000107 NCBI chr 4:175,718,808...175,737,128
Ensembl chr 4:175,718,808...175,737,125 		JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase involved_in IEA
ISO		 GO_REF:0000107
MGI:2182685 (PMID:11929971)
(PMID:31121216)		 Ensembl
RGD		 PMID:11929971 PMID:31121216 GO_REF:0000107 NCBI chr 5:58,267,189...58,307,396
Ensembl chr 5:58,267,210...58,307,499 		JBrowse link
G Nanp N-acetylneuraminic acid phosphatase involved_in ISO (PMID:31121216)
MGI:2182685 (PMID:11929971)		 RGD PMID:11929971 PMID:31121216 NCBI chr 3:139,826,549...139,841,655
Ensembl chr 3:139,826,549...139,841,648 		JBrowse link
G Nans N-acetylneuraminate synthase involved_in ISO
IEA		 (PMID:31121216)
GO_REF:0000107
MGI:2182685 (PMID:11929971)		 RGD
Ensembl		 PMID:11929971 PMID:31121216 GO_REF:0000107 NCBI chr 5:60,780,441...60,797,583
Ensembl chr 5:60,780,392...60,814,950 		JBrowse link
G Slc35a1 solute carrier family 35 member A1 involved_in ISO
IEA		 (PMID:32303557)
GO_REF:0000107		 RGD
Ensembl		 PMID:32303557 GO_REF:0000107 NCBI chr 5:49,225,599...49,248,382
Ensembl chr 5:49,225,602...49,248,335 		JBrowse link
GDP-D-mannose biosynthetic process from fructose-6-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpi mannose phosphate isomerase involved_in ISO
IEA		 (PMID:9525984)
GO_REF:0000107		 RGD
Ensembl		 PMID:9525984 GO_REF:0000107 NCBI chr 8:57,947,883...57,956,205
Ensembl chr 8:57,947,893...57,956,150 		JBrowse link
G Pmm2 phosphomannomutase 2 involved_in ISO
IEA		 (PMID:9525984)
GO_REF:0000107		 RGD
Ensembl		 PMID:9525984 GO_REF:0000107 NCBI chr10:6,961,521...6,982,913
Ensembl chr10:6,961,709...6,983,098 		JBrowse link
GDP-L-fucose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr19:38,849,130...38,874,497
Ensembl chr19:38,854,762...38,874,418 		JBrowse link
G Fpgt fucose-1-phosphate guanylyltransferase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 2:244,099,031...244,119,967
Ensembl chr 2:244,099,076...244,119,899 		JBrowse link
GDP-L-fucose salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase involved_in ISO
IBA		 (PMID:30503518)
GO_REF:0000033
(PMID:14686921)		 RGD
GO_Central		 PMID:14686921 PMID:30503518 GO_REF:0000033 NCBI chr19:38,849,130...38,874,497
Ensembl chr19:38,854,762...38,874,418 		JBrowse link
G Fpgt fucose-1-phosphate guanylyltransferase involved_in ISO
IEA		 (PMID:14686921)
GO_REF:0000107		 RGD
Ensembl		 PMID:14686921 GO_REF:0000107 NCBI chr 2:244,099,031...244,119,967
Ensembl chr 2:244,099,076...244,119,899 		JBrowse link
G Fuom fucose mutarotase involved_in ISO
IEA		 (PMID:17602138)
GO_REF:0000107		 RGD
Ensembl		 PMID:17602138 GO_REF:0000107 NCBI chr 1:194,888,535...194,893,046
Ensembl chr 1:194,886,709...194,893,046 		JBrowse link
G Slc35c1 solute carrier family 35 member C1 involved_in ISO MGI:3709989 (PMID:17276979) RGD PMID:17276979 NCBI chr 3:78,421,925...78,429,603
Ensembl chr 3:78,421,933...78,428,520 		JBrowse link
GDP-mannose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmppa GDP-mannose pyrophosphorylase A acts_upstream_of_or_within ISO
IEA		 (PMID:33755596)
GO_REF:0000107		 RGD
Ensembl		 PMID:33755596 GO_REF:0000107 NCBI chr 9:84,375,373...84,382,917
Ensembl chr 9:76,926,739...76,934,269 		JBrowse link
G Gmppb GDP-mannose pyrophosphorylase B involved_in ISO
IBA		 (PMID:26310427)
GO_REF:0000033
MGI:7610557 (PMID:38419795)		 RGD
GO_Central		 PMID:26310427 PMID:38419795 GO_REF:0000033 NCBI chr 8:108,737,429...108,740,437
Ensembl chr 8:108,693,060...108,767,286 		JBrowse link
G LOC120093860 phosphomannomutase 1-like involved_in IEA GO_REF:0000041
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 NCBI chr 7:93,489,893...93,490,745
Ensembl chr 7:93,489,958...93,490,745 		JBrowse link
G Mpi mannose phosphate isomerase involved_in IEA
ISO
IBA		 GO_REF:0000041
GO_REF:0000107
GO_REF:0000002
(PMID:24218558)
GO_REF:0000033		 UniProt
Ensembl
InterPro
RGD
GO_Central		 PMID:24218558 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr 8:57,947,883...57,956,205
Ensembl chr 8:57,947,893...57,956,150 		JBrowse link
G Pmm1 phosphomannomutase 1 involved_in IEA GO_REF:0000041
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 NCBI chr 7:113,466,632...113,477,004
Ensembl chr 7:113,466,632...113,477,022 		JBrowse link
G Pmm2 phosphomannomutase 2 involved_in ISO
IEA		 MGI:5811780 (PMID:27053713)
GO_REF:0000002
GO_REF:0000107
GO_REF:0000041		 RGD
InterPro
Ensembl
UniProt		 PMID:27053713 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr10:6,961,521...6,982,913
Ensembl chr10:6,961,709...6,983,098 		JBrowse link
GDP-mannose biosynthetic process from mannose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmppb GDP-mannose pyrophosphorylase B involved_in ISO MGI:7610557 (PMID:38419795) RGD PMID:38419795 NCBI chr 8:108,737,429...108,740,437
Ensembl chr 8:108,693,060...108,767,286 		JBrowse link
G Hk1 hexokinase 1 involved_in ISO
IEA		 (PMID:21273394)
GO_REF:0000107		 RGD
Ensembl		 PMID:21273394 GO_REF:0000107 NCBI chr20:30,230,488...30,332,099
Ensembl chr20:30,230,486...30,332,131 		JBrowse link
G Pmm2 phosphomannomutase 2 involved_in ISO
IEA		 MGI:5811780 (PMID:27053713)
GO_REF:0000107
(PMID:9525984)		 RGD
Ensembl		 PMID:9525984 PMID:27053713 GO_REF:0000107 NCBI chr10:6,961,521...6,982,913
Ensembl chr10:6,961,709...6,983,098 		JBrowse link
negative regulation of UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd2 amidohydrolase domain containing 2 involved_in ISO
IEA		 (PMID:35229715)
GO_REF:0000107		 RGD
Ensembl		 PMID:35229715 GO_REF:0000107 NCBI chr10:13,187,579...13,196,148
Ensembl chr10:13,187,578...13,196,095 		JBrowse link
UDP-D-xylose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uxs1 UDP-glucuronate decarboxylase 1 involved_in IEA
ISO		 GO_REF:0000041
(PMID:22810237), (PMID:25521717)		 UniProt
RGD		 PMID:22810237 PMID:25521717 GO_REF:0000041 NCBI chr 9:653,740...731,121
Ensembl chr 9:653,659...756,334 		JBrowse link
UDP-glucuronate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugdh UDP-glucose 6-dehydrogenase involved_in IEA
ISO
ISS		 GO_REF:0000041
GO_REF:0000107
(PMID:32768525)
GO_REF:0000024
(PMID:27966912)		 UniProt
Ensembl
RGD		 PMID:27966912 PMID:32768525 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr14:43,202,480...43,226,002
Ensembl chr14:42,848,854...42,872,354 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in ISO
IEA		 (PMID:32286295)
GO_REF:0000107		 RGD
Ensembl		 PMID:32286295 GO_REF:0000107 NCBI chr14:95,456,330...95,497,483
Ensembl chr14:95,456,330...95,496,830 		JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07059877.1 involved_in IEA GO_REF:0000041
GO_REF:0000104		 UniProt GO_REF:0000041 GO_REF:0000104 Ensembl chr 4:41,548,914...41,549,455 JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IEA
ISO
ISS		 GO_REF:0000041
(PMID:26887390), (PMID:35229715)
GO_REF:0000024		 UniProt
RGD		 PMID:26887390 PMID:35229715 GO_REF:0000024 GO_REF:0000041 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471 		JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IEA
ISO		 GO_REF:0000041
GO_REF:0000107
(PMID:35229715)		 UniProt
Ensembl
RGD		 PMID:35229715 GO_REF:0000041 GO_REF:0000107 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329 		JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000107
GO_REF:0000041		 RGD
Ensembl
UniProt		 PMID:26887390 GO_REF:0000041 GO_REF:0000107 NCBI chr18:30,416,599...30,428,630
Ensembl chr18:30,165,427...30,177,486 		JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000107
GO_REF:0000041		 RGD
Ensembl
UniProt		 PMID:26887390 GO_REF:0000041 GO_REF:0000107 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 involved_in IEA
ISO		 GO_REF:0000041
GO_REF:0000104
(PMID:11013212)		 UniProt
RGD		 PMID:11013212 GO_REF:0000041 GO_REF:0000104 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739 		JBrowse link
G Nagk N-acetylglucosamine kinase involved_in ISO (PMID:34844667) RGD PMID:34844667 NCBI chr 4:116,281,179...116,293,870
Ensembl chr 4:116,281,328...116,313,137 		JBrowse link
G Pgm3 phosphoglucomutase 3 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:24589341)
GO_REF:0000104
MGI:3758645 (PMID:17548465)
GO_REF:0000033
GO_REF:0000041		 RGD
UniProt
GO_Central		 PMID:17548465 PMID:24589341 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469
Ensembl chr 6:82,342,946...82,377,469 		JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:8,172,335...8,180,505
Ensembl chr 3:8,173,216...8,180,443 		JBrowse link
G Uap1l2 UDP-N-acetylglucosamine pyrophosphorylase 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:1,714,320...1,741,396 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        carbohydrate derivative metabolic process 1052
          carbohydrate derivative biosynthetic process 611
            nucleotide-sugar biosynthetic process 33
              ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
              CMP-N-acetylneuraminate biosynthetic process 5
              CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              GDP-D-rhamnose biosynthetic process 0
              GDP-L-fucose biosynthetic process + 6
              GDP-L-galactose biosynthetic process 0
              GDP-mannose biosynthetic process + 7
              UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
              UDP-D-apiose biosynthetic process 0
              UDP-D-galacturonate biosynthetic process 0
              UDP-D-xylose biosynthetic process 1
              UDP-L-arabinose biosynthetic process 0
              UDP-N-acetylgalactosamine biosynthetic process 0
              UDP-N-acetylglucosamine biosynthetic process + 12
              UDP-alpha-D-glucose biosynthetic process 0
              UDP-galactose biosynthetic process 0
              UDP-glucuronate biosynthetic process 2
              UDP-rhamnose biosynthetic process 0
              dTDP-mannose biosynthetic process 0
              dTDP-rhamnose biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      metabolic process 12180
        primary metabolic process 10745
          nucleobase-containing compound metabolic process 5888
            nucleobase-containing small molecule metabolic process 723
              nucleoside phosphate metabolic process 689
                nucleoside phosphate biosynthetic process 306
                  nucleotide-sugar biosynthetic process 33
                    ADP-L-glycero-beta-D-manno-heptose biosynthetic process 0
                    CMP-N-acetylneuraminate biosynthetic process 5
                    CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
                    GDP-D-rhamnose biosynthetic process 0
                    GDP-L-fucose biosynthetic process + 6
                    GDP-L-galactose biosynthetic process 0
                    GDP-mannose biosynthetic process + 7
                    UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process 0
                    UDP-D-apiose biosynthetic process 0
                    UDP-D-galacturonate biosynthetic process 0
                    UDP-D-xylose biosynthetic process 1
                    UDP-L-arabinose biosynthetic process 0
                    UDP-N-acetylgalactosamine biosynthetic process 0
                    UDP-N-acetylglucosamine biosynthetic process + 12
                    UDP-alpha-D-glucose biosynthetic process 0
                    UDP-galactose biosynthetic process 0
                    UDP-glucuronate biosynthetic process 2
                    UDP-rhamnose biosynthetic process 0
                    dTDP-mannose biosynthetic process 0
                    dTDP-rhamnose biosynthetic process 0
paths to the root