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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide-sugar metabolic process
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Accession:GO:0009225 term browser browse the term
Definition:The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms:exact_synonym: nucleotide-sugar metabolism


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nucleotide-sugar metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parg poly (ADP-ribose) glycohydrolase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:8,350,168...8,457,999
Ensembl chr16:8,350,326...8,457,996
JBrowse link
G Tgds TDP-glucose 4,6-dehydratase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:103,319,268...103,340,239
Ensembl chr15:103,319,268...103,340,240
JBrowse link
'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfus GDP-L-fucose synthase ISO
IEA
(PMID:9525924)
GO_REF:0000041
RGD
UniProt
PMID:9525924 GO_REF:0000041 NCBI chr 7:116,958,427...116,963,281
Ensembl chr 7:116,958,392...116,963,295
JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase ISO
IEA
IBA
ISS
(PMID:9525924)
GO_REF:0000041
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9525924, PMID:21873635 GO_REF:0000024, GO_REF:0000041, RGD:13792537 NCBI chr17:33,408,722...33,938,086
Ensembl chr17:33,408,722...33,938,085
JBrowse link
CMP-N-acetylneuraminate metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmahp cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene ISO (MGI:MGI:74284|PMID:7608218) RGD PMID:7608218 MGI:MGI:74284 NCBI chr17:42,567,472...42,640,221
Ensembl chr17:42,583,945...42,640,221
JBrowse link
GDP-L-fucose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fut8 fucosyltransferase 8 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17172260)
Ensembl
UniProt
RGD
PMID:17172260 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:100,305,957...100,537,208
Ensembl chr 6:100,337,226...100,537,224
JBrowse link
GDP-L-fucose salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase ISO
IBA
(PMID:30503518)
PMID:21873635
RGD PMID:30503518, PMID:21873635 RGD:13792537 NCBI chr19:43,338,146...43,357,826
Ensembl chr19:43,338,166...43,357,822
JBrowse link
GDP-mannose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmppb GDP-mannose pyrophosphorylase B ISO (PMID:26310427) RGD PMID:26310427 NCBI chr 8:116,826,251...116,856,159
Ensembl chr 8:116,826,680...116,856,159
JBrowse link
G Mpi mannose phosphate isomerase IEA
IBA
ISO
GO_REF:0000041
PMID:21873635
(MGI:MGI:5523713|PMID:24218558)
UniProt
RGD
PMID:24218558, PMID:21873635 GO_REF:0000041, MGI:MGI:5523713, RGD:13792537 NCBI chr 8:62,324,176...62,332,080
Ensembl chr 8:62,324,092...62,332,115
JBrowse link
G Pmm1 phosphomannomutase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:123,183,504...123,193,874
Ensembl chr 7:123,183,506...123,193,761
JBrowse link
G Pmm2 phosphomannomutase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:7,056,258...7,077,443
Ensembl chr10:7,056,266...7,077,443
JBrowse link
GDP-mannose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic IDA RGD PMID:2844175 RGD:1601442 NCBI chr 3:164,966,637...164,986,180
Ensembl chr 3:164,966,637...164,986,180
JBrowse link
G Gfus GDP-L-fucose synthase ISO (PMID:9525924) RGD PMID:9525924 NCBI chr 7:116,958,427...116,963,281
Ensembl chr 7:116,958,392...116,963,295
JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
UniProtKB:Q8K3X3 (PMID:9525924), (PMID:9603974)
UniProt
RGD
PMID:9525924, PMID:9603974, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr17:33,408,722...33,938,086
Ensembl chr17:33,408,722...33,938,085
JBrowse link
G Guk1 guanylate kinase 1 IDA RGD PMID:10913137 RGD:5147867 NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
JBrowse link
UDP-D-xylose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uxs1 UDP-glucuronate decarboxylase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-glucose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galt galactose-1-phosphate uridylyltransferase IDA RGD PMID:8255669 RGD:1598677 NCBI chr 5:58,144,679...58,147,946
Ensembl chr 5:58,144,705...58,147,929
JBrowse link
UDP-glucose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galt galactose-1-phosphate uridylyltransferase ISO (PMID:27005423) RGD PMID:27005423 NCBI chr 5:58,144,679...58,147,946
Ensembl chr 5:58,144,705...58,147,929
JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 IDA
IBA
ISO
PMID:21873635
(PMID:31820119), (PMID:8354390), (PMID:8631325)
RGD PMID:8354390, PMID:8631325, PMID:31820119, PMID:4374936, PMID:21873635, PMID:6331395 RGD:2303737, RGD:13792537, RGD:2303740 NCBI chr14:106,208,174...106,249,322
Ensembl chr14:106,208,176...106,248,539
JBrowse link
UDP-glucosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:42,692,156...42,805,680
Ensembl chr 9:42,692,105...42,805,673
JBrowse link
UDP-glucuronate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugdh UDP-glucose 6-dehydrogenase IEA
ISO
ISS
GO_REF:0000041
(PMID:27966912)
GO_REF:0000024
UniProt
RGD
PMID:27966912 GO_REF:0000024, GO_REF:0000041 NCBI chr14:44,479,614...44,502,845
Ensembl chr14:44,479,614...44,502,845
JBrowse link
UDP-glucuronate metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
JBrowse link
UDP-N-acetylgalactosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 ISO (PMID:12678917), (PMID:14688233) RGD PMID:12678917, PMID:14688233 NCBI chr10:83,677,768...83,701,487 JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 ISO (MGI:MGI:5882911|PMID:12562774)
(PMID:10318803)
RGD PMID:10318803, PMID:12562774 MGI:MGI:5882911 NCBI chr 2:218,951,112...218,972,576
Ensembl chr 2:218,951,141...218,971,886
JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:35,279,237...35,325,506
Ensembl chr10:35,279,236...35,325,508
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:31,479,117...31,489,154
Ensembl chr18:31,479,117...31,487,671
JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:62,628,102...62,646,158
Ensembl chr14:62,628,111...62,646,110
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Pgm3 phosphoglucomutase 3 ISO
IBA
IEA
MGI:MGI:3758645 (MGI:MGI:3723540|PMID:17548465)
PMID:21873635
(PMID:24589341)
GO_REF:0000041
RGD
UniProt
PMID:17548465, PMID:24589341, PMID:21873635 GO_REF:0000041, MGI:MGI:3723540, RGD:13792537 NCBI chr 8:94,225,513...94,243,230
Ensembl chr 8:94,225,515...94,243,215
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:88,463,532...88,497,901
Ensembl chr13:88,463,532...88,497,901
JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:2,579,250...2,584,523
Ensembl chr 3:2,579,258...2,584,523
JBrowse link
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase ISO (MGI:MGI:51667|PMID:1421759) RGD PMID:1421759 MGI:MGI:51667 NCBI chr10:34,518,392...34,537,214
Ensembl chr10:34,519,790...34,537,210
JBrowse link
UDP-N-acetylglucosamine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 ISO MGI:MGI:3579308 (MGI:MGI:56455|PMID:4031755), (MGI:MGI:65525|PMID:8137279) RGD PMID:4031755, PMID:8137279 MGI:MGI:56455, MGI:MGI:65525 NCBI chr10:83,677,768...83,701,487 JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IDA RGD PMID:8280061 RGD:1624315 NCBI chr 8:48,657,779...48,664,531
Ensembl chr 8:48,657,795...48,664,860
JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:10898949, PMID:21873635 RGD:1625426, RGD:13792537 NCBI chr 4:118,852,046...118,901,583
Ensembl chr 4:118,852,062...118,901,591
JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,279,237...35,325,506
Ensembl chr10:35,279,236...35,325,508
JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:59,511,738...59,553,421
Ensembl chr 5:59,512,872...59,553,416
JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IDA RGD PMID:6303311 RGD:1625549 NCBI chr13:88,463,532...88,497,901
Ensembl chr13:88,463,532...88,497,901
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      small molecule metabolic process 1869
        nucleobase-containing small molecule metabolic process 590
          nucleotide-sugar metabolic process 32
            ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
            CMP-N-acetylneuraminate metabolic process + 1
            CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
            GDP-D-rhamnose metabolic process + 0
            GDP-L-fucose metabolic process + 4
            GDP-L-galactose metabolic process + 0
            GDP-mannose metabolic process + 8
            UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
            UDP-D-apiose metabolic process + 0
            UDP-D-galactose metabolic process + 0
            UDP-D-galacturonate metabolic process + 0
            UDP-D-xylose metabolic process + 1
            UDP-L-arabinose metabolic process + 0
            UDP-N-acetylgalactosamine metabolic process + 3
            UDP-N-acetylglucosamine metabolic process + 12
            UDP-glucose metabolic process + 3
            UDP-glucuronate metabolic process + 2
            UDP-rhamnose metabolic process + 0
            dTDP-mannose metabolic process + 0
            dTDP-rhamnose metabolic process + 0
            nucleotide-sugar biosynthetic process + 17
            nucleotide-sugar catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleotide-sugar metabolic process 32
                ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
                CMP-N-acetylneuraminate metabolic process + 1
                CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
                GDP-D-rhamnose metabolic process + 0
                GDP-L-fucose metabolic process + 4
                GDP-L-galactose metabolic process + 0
                GDP-mannose metabolic process + 8
                UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
                UDP-D-apiose metabolic process + 0
                UDP-D-galactose metabolic process + 0
                UDP-D-galacturonate metabolic process + 0
                UDP-D-xylose metabolic process + 1
                UDP-L-arabinose metabolic process + 0
                UDP-N-acetylgalactosamine metabolic process + 3
                UDP-N-acetylglucosamine metabolic process + 12
                UDP-glucose metabolic process + 3
                UDP-glucuronate metabolic process + 2
                UDP-rhamnose metabolic process + 0
                dTDP-mannose metabolic process + 0
                dTDP-rhamnose metabolic process + 0
                nucleotide-sugar biosynthetic process + 17
                nucleotide-sugar catabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.