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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleotide-sugar metabolic process
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Accession:GO:0009225 term browser browse the term
Definition:The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
Synonyms:exact_synonym: nucleotide-sugar metabolism


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nucleotide-sugar metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parg poly (ADP-ribose) glycohydrolase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:7,436,429...7,544,276
Ensembl chr16:7,436,476...7,544,273 		JBrowse link
G Tgds TDP-glucose 4,6-dehydratase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:95,175,064...95,195,555
Ensembl chr15:95,174,608...95,195,554 		JBrowse link
'de novo' GDP-L-fucose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfus GDP-L-fucose synthase involved_in ISO
IEA		 (PMID:9525924)
GO_REF:0000041		 RGD
UniProt		 PMID:9525924 GO_REF:0000041 NCBI chr 7:107,612,087...107,617,005
Ensembl chr 7:107,612,094...107,616,948 		JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase involved_in ISO
IBA
ISS
IEA		 (PMID:9525924)
PMID:21873635
GO_REF:0000024
GO_REF:0000041		 RGD
UniProt		 PMID:9525924 PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:13792537 NCBI chr17:32,095,315...32,621,975
Ensembl chr17:32,095,386...32,621,961 		JBrowse link
CMP-N-acetylneuraminate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmahp cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:74284|PMID:7608218)
PMID:21873635		 RGD PMID:7608218 PMID:21873635 MGI:74284, RGD:13792537 NCBI chr17:40,557,161...40,642,350
Ensembl chr17:40,583,667...40,642,275 		JBrowse link
GDP-L-fucose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fut8 fucosyltransferase 8 involved_in ISO
IEA
ISS		 (PMID:17172260)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17172260 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:95,949,246...96,176,677
Ensembl chr 6:95,949,991...96,176,677 		JBrowse link
GDP-L-fucose salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcsk fucose kinase involved_in ISO
IBA		 (PMID:30503518)
PMID:21873635		 RGD PMID:30503518 PMID:21873635 RGD:13792537 NCBI chr19:38,849,130...38,874,497
Ensembl chr19:38,854,762...38,874,418 		JBrowse link
GDP-mannose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmppb GDP-mannose pyrophosphorylase B involved_in ISO
IBA		 (PMID:26310427)
PMID:21873635		 RGD PMID:26310427 PMID:21873635 RGD:13792537 NCBI chr 8:108,737,429...108,740,437
Ensembl chr 8:108,693,060...108,767,286 		JBrowse link
G LOC120093860 phosphomannomutase 1-like involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:93,489,893...93,490,745
Ensembl chr 7:93,489,958...93,490,745 		JBrowse link
G Mpi mannose phosphate isomerase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000041
PMID:21873635
(MGI:5523713|PMID:24218558)		 UniProt
RGD		 PMID:24218558 PMID:21873635 GO_REF:0000041 MGI:5523713, RGD:13792537 NCBI chr 8:57,947,883...57,956,205
Ensembl chr 8:57,947,893...57,956,150 		JBrowse link
G Pmm1 phosphomannomutase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:113,466,632...113,477,004
Ensembl chr 7:113,466,632...113,477,022 		JBrowse link
G Pmm2 phosphomannomutase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:6,961,521...6,982,913
Ensembl chr10:6,961,709...6,983,098 		JBrowse link
GDP-mannose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic IDA RGD PMID:2844175 RGD:1601442 NCBI chr 3:156,919,979...156,939,522
Ensembl chr 3:156,919,979...156,939,536 		JBrowse link
G Gfus GDP-L-fucose synthase involved_in ISO (PMID:9525924) RGD PMID:9525924 NCBI chr 7:107,612,087...107,617,005
Ensembl chr 7:107,612,094...107,616,948 		JBrowse link
G Gmds GDP-mannose 4, 6-dehydratase involved_in ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
UniProtKB:Q8K3X3 (PMID:9525924), (PMID:9603974)		 UniProt
RGD		 PMID:9525924 PMID:9603974 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr17:32,095,315...32,621,975
Ensembl chr17:32,095,386...32,621,961 		JBrowse link
G Guk1 guanylate kinase 1 IDA RGD PMID:10913137 RGD:5147867 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
UDP-D-xylose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uxs1 UDP-glucuronate decarboxylase 1 involved_in IEA
ISO		 GO_REF:0000041
(PMID:22810237), (PMID:25521717)		 UniProt
RGD		 PMID:22810237 PMID:25521717 GO_REF:0000041 NCBI chr 9:653,740...731,121
Ensembl chr 9:653,659...756,334 		JBrowse link
UDP-glucose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galt galactose-1-phosphate uridylyltransferase IDA RGD PMID:8255669 RGD:1598677 NCBI chr 5:56,927,039...56,930,284
Ensembl chr 5:56,926,724...56,930,265 		JBrowse link
UDP-glucose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 acts_upstream_of_positive_effect ISS
ISO		 GO_REF:0000024
(MGI:4881347|PMID:21074248)		 UniProt
RGD		 PMID:21074248 GO_REF:0000024 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Galt galactose-1-phosphate uridylyltransferase involved_in ISO
IEA		 (PMID:27005423)
GO_REF:0000107		 RGD
Ensembl		 PMID:27005423 GO_REF:0000107 NCBI chr 5:56,927,039...56,930,284
Ensembl chr 5:56,926,724...56,930,265 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in IDA
IBA
ISO		 PMID:21873635
(PMID:31820119), (PMID:8354390), (PMID:8631325)		 RGD PMID:8354390 PMID:8631325 PMID:31820119 PMID:4374936 PMID:21873635 More... RGD:2303737, RGD:13792537, RGD:2303740 NCBI chr14:95,456,330...95,497,483
Ensembl chr14:95,456,330...95,496,830 		JBrowse link
UDP-glucosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07019403.1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108
G ENSRNOG00000063112 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr15:96,146,743...96,185,407 JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:38,355,229...38,468,473
Ensembl chr 9:38,359,089...38,468,467 		JBrowse link
G Uggt2 UDP-glucose glycoprotein glucosyltransferase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:96,074,557...96,239,365
Ensembl chr15:96,074,564...96,237,806 		JBrowse link
UDP-glucuronate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ugdh UDP-glucose 6-dehydrogenase involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:27966912)		 UniProt
RGD		 PMID:27966912 GO_REF:0000024 GO_REF:0000041 NCBI chr14:42,848,704...42,872,351
Ensembl chr14:42,848,854...42,872,354 		JBrowse link
UDP-glucuronate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
UDP-N-acetylgalactosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 involved_in ISO (PMID:12678917), (PMID:14688233) RGD PMID:12678917 PMID:14688233 NCBI chr10:80,801,594...80,828,005
Ensembl chr10:80,802,941...80,857,700 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISO (PMID:11514575) RGD PMID:11514575 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
G Extl2 exostosin-like glycosyltransferase 2 involved_in ISO (PMID:10318803)
(MGI:5882911|PMID:12562774)		 RGD PMID:10318803 PMID:12562774 MGI:5882911 NCBI chr 2:203,922,217...203,946,940
Ensembl chr 2:203,922,187...203,943,653 		JBrowse link
UDP-N-acetylglucosamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07059877.1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr 4:41,548,914...41,549,455 JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IEA
ISO
ISS		 GO_REF:0000041
(PMID:26887390)
GO_REF:0000024		 UniProt
RGD		 PMID:26887390 GO_REF:0000024 GO_REF:0000041 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471 		JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329 		JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000041		 RGD
UniProt		 PMID:26887390 GO_REF:0000041 NCBI chr18:30,165,435...30,177,462
Ensembl chr18:30,165,427...30,177,486 		JBrowse link
G Gnpda2 glucosamine-6-phosphate deaminase 2 involved_in ISO
IEA		 (PMID:26887390)
GO_REF:0000041		 RGD
UniProt		 PMID:26887390 GO_REF:0000041 NCBI chr14:38,520,663...38,538,713
Ensembl chr14:38,520,705...38,538,713 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739 		JBrowse link
G Pgm3 phosphoglucomutase 3 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 PMID:21873635
MGI:3758645 (MGI:3723540|PMID:17548465)
GO_REF:0000041
(PMID:24589341)		 RGD
UniProt		 PMID:17548465 PMID:24589341 PMID:21873635 GO_REF:0000041 MGI:3723540, RGD:13792537 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469 		JBrowse link
G Uap1l1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,172,335...8,180,505
Ensembl chr 3:8,173,216...8,180,443 		JBrowse link
UDP-N-acetylglucosamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat1 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:51667|PMID:1421759) RGD PMID:1421759 MGI:51667 NCBI chr10:33,563,642...33,582,718
Ensembl chr10:33,561,388...33,591,503 		JBrowse link
UDP-N-acetylglucosamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galnt2 beta-1,4-N-acetyl-galactosaminyl transferase 2 acts_upstream_of_or_within ISO MGI:3579308 (MGI:56455|PMID:4031755), (MGI:65525|PMID:8137279) RGD PMID:4031755 PMID:8137279 MGI:56455 MGI:65525 NCBI chr10:80,801,594...80,828,005
Ensembl chr10:80,802,941...80,857,700 		JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IDA RGD PMID:8280061 RGD:1624315 NCBI chr 8:44,664,055...44,671,102
Ensembl chr 8:44,664,071...44,671,087 		JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in IMP
IBA		 PMID:21873635 RGD
GO_Central		 PMID:10898949 PMID:21873635 RGD:1625426, RGD:13792537 NCBI chr 4:119,496,691...119,546,472
Ensembl chr 4:119,496,714...119,546,471 		JBrowse link
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,115,005...34,161,329
Ensembl chr10:34,115,052...34,161,329 		JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:58,267,189...58,307,396
Ensembl chr 5:58,267,210...58,307,499 		JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 IDA RGD PMID:6303311 RGD:1625549 NCBI chr13:82,342,946...82,377,558
Ensembl chr13:82,342,946...82,377,469 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      small molecule metabolic process 1918
        nucleobase-containing small molecule metabolic process 684
          nucleotide-sugar metabolic process 38
            ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
            CMP-N-acetylneuraminate metabolic process + 1
            CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
            GDP-D-rhamnose metabolic process + 0
            GDP-L-fucose metabolic process + 4
            GDP-L-galactose metabolic process + 0
            GDP-mannose metabolic process + 9
            UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
            UDP-D-apiose metabolic process + 0
            UDP-D-galactose metabolic process + 0
            UDP-D-galacturonate metabolic process + 0
            UDP-D-xylose metabolic process + 1
            UDP-L-arabinose metabolic process + 0
            UDP-N-acetylgalactosamine metabolic process + 3
            UDP-N-acetylglucosamine metabolic process + 13
            UDP-glucose metabolic process + 7
            UDP-glucuronate metabolic process + 2
            UDP-rhamnose metabolic process + 0
            dTDP-mannose metabolic process + 0
            dTDP-rhamnose metabolic process + 0
            nucleotide-sugar biosynthetic process + 19
            nucleotide-sugar catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      cellular metabolic process 10124
        cellular aromatic compound metabolic process 5773
          nucleobase-containing compound metabolic process 5539
            nucleobase-containing small molecule metabolic process 684
              nucleotide-sugar metabolic process 38
                ADP-L-glycero-beta-D-manno-heptose metabolic process + 0
                CMP-N-acetylneuraminate metabolic process + 1
                CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process + 0
                GDP-D-rhamnose metabolic process + 0
                GDP-L-fucose metabolic process + 4
                GDP-L-galactose metabolic process + 0
                GDP-mannose metabolic process + 9
                UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process + 0
                UDP-D-apiose metabolic process + 0
                UDP-D-galactose metabolic process + 0
                UDP-D-galacturonate metabolic process + 0
                UDP-D-xylose metabolic process + 1
                UDP-L-arabinose metabolic process + 0
                UDP-N-acetylgalactosamine metabolic process + 3
                UDP-N-acetylglucosamine metabolic process + 13
                UDP-glucose metabolic process + 7
                UDP-glucuronate metabolic process + 2
                UDP-rhamnose metabolic process + 0
                dTDP-mannose metabolic process + 0
                dTDP-rhamnose metabolic process + 0
                nucleotide-sugar biosynthetic process + 19
                nucleotide-sugar catabolic process + 2
paths to the root