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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation

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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936741:950,681...999,290
Ensembl chrNW_004936741:965,273...999,247 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:20,465,767...20,513,084
Ensembl chrNW_004936469:20,465,767...20,513,075 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:12,880,745...12,884,240
Ensembl chrNW_004936501:12,879,241...12,884,287 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Tymp thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:315,609...320,356
Ensembl chrNW_004936629:315,610...319,076 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:15772079) Ensembl
UniProt		 PMID:15772079 GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004936501:12,880,745...12,884,240
Ensembl chrNW_004936501:12,879,241...12,884,287 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chrNW_004936741:950,681...999,290
Ensembl chrNW_004936741:965,273...999,247 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro
UniProt		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chrNW_004936471:10,670,604...10,681,356 JBrowse link
G LOC101969523 deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like involved_in IEA UniProt
InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:8,287,036...8,287,704 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      metabolic process 9980
        catabolic process 2417
          carbohydrate derivative catabolic process 245
            deoxyribose phosphate catabolic process 25
              pyrimidine deoxyribonucleotide catabolic process 11
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 2
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      metabolic process 9980
        primary metabolic process 8867
          nucleobase-containing compound metabolic process 4939
            nucleobase-containing small molecule metabolic process 596
              nucleoside phosphate metabolic process 570
                nucleotide metabolic process 433
                  deoxyribonucleotide metabolic process 42
                    2'-deoxyribonucleotide metabolic process 40
                      pyrimidine deoxyribonucleotide metabolic process 17
                        pyrimidine deoxyribonucleotide catabolic process 11
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 2
                          depyrimidination 0
paths to the root