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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation


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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,162,243...6,164,140 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,414...120,712,459 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,162,243...6,164,140 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,533,208...49,561,518
Ensembl chr14:49,533,231...49,565,075 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) MGI PMID:7744869 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736 		JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,795...65,131,788 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 involved_in IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,890...17,900,557 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,162,243...6,164,140 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in		 ISO (PMID:12077348)
(PMID:15772079)		 MGI
UniProt		 PMID:12077348 PMID:15772079 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chr 3:17,896,426...17,900,562
Ensembl chr 3:17,886,890...17,900,557 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,414...120,712,459 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,162,243...6,164,140 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chr12:60,979,496...60,994,577
Ensembl chr12:60,979,499...60,994,582 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,533,208...49,561,518
Ensembl chr14:49,533,231...49,565,075 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) MGI PMID:14154460 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA
IBA		 RGD
UniProt
InterPro
GO_Central		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,450,858...123,462,245 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17668
    cellular process 17206
      metabolic process 10557
        catabolic process 2565
          carbohydrate derivative catabolic process 247
            deoxyribose phosphate catabolic process 23
              pyrimidine deoxyribonucleotide catabolic process 9
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 2
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 1
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 17668
    cellular process 17206
      metabolic process 10557
        primary metabolic process 9296
          nucleobase-containing compound metabolic process 5226
            nucleobase-containing small molecule metabolic process 614
              nucleoside phosphate metabolic process 583
                nucleotide metabolic process 439
                  deoxyribonucleotide metabolic process 40
                    2'-deoxyribonucleotide metabolic process 38
                      pyrimidine deoxyribonucleotide metabolic process 15
                        pyrimidine deoxyribonucleotide catabolic process 9
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 2
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 1
                          depyrimidination 0
paths to the root