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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation

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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:4,031,421...4,098,326
Ensembl chrNW_004624849:4,052,050...4,098,149 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624763:20,618,515...20,680,790
Ensembl chrNW_004624763:20,620,380...20,680,782 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) MGI PMID:7744869 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chrNW_004624732:7,574,609...7,641,345
Ensembl chrNW_004624732:7,597,782...7,644,423 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) MGI PMID:6301357 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO (PMID:12077348) MGI PMID:12077348 NCBI chrNW_004624752:251,670...256,243
Ensembl chrNW_004624752:252,937...256,244 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 ISO (PMID:12077348)
(PMID:15772079)		 MGI
UniProt		 PMID:12077348 PMID:15772079 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624763:20,618,515...20,680,790
Ensembl chrNW_004624763:20,620,380...20,680,782 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chrNW_004624801:4,952,736...4,954,660
Ensembl chrNW_004624801:4,952,736...4,954,639 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) MGI PMID:12234672 NCBI chrNW_004624849:4,031,421...4,098,326
Ensembl chrNW_004624849:4,052,050...4,098,149 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) MGI PMID:14154460 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004624731:11,378,882...11,388,677
Ensembl chrNW_004624731:11,378,944...11,388,057 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      metabolic process 9450
        catabolic process 2288
          carbohydrate derivative catabolic process 225
            deoxyribose phosphate catabolic process 20
              pyrimidine deoxyribonucleotide catabolic process 8
                dCDP catabolic process 0
                dCMP catabolic process 5
                dCTP catabolic process 0
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 0
                dUDP catabolic process 0
                dUMP catabolic process 5
                dUTP catabolic process 1
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      metabolic process 9450
        primary metabolic process 8379
          nucleobase-containing compound metabolic process 4594
            nucleobase-containing small molecule metabolic process 563
              nucleoside phosphate metabolic process 537
                nucleotide metabolic process 412
                  deoxyribonucleotide metabolic process 37
                    2'-deoxyribonucleotide metabolic process 35
                      pyrimidine deoxyribonucleotide metabolic process 14
                        pyrimidine deoxyribonucleotide catabolic process 8
                          dCDP catabolic process 0
                          dCMP catabolic process 5
                          dCTP catabolic process 0
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 0
                          dUDP catabolic process 0
                          dUMP catabolic process 5
                          dUTP catabolic process 1
                          depyrimidination 0
paths to the root