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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation


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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5',3'-nucleotidase, cytosolic involved_in ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:59,730,233...59,767,359
Ensembl chr11:59,730,273...59,771,794 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO MGI GO_REF:0000008 NCBI chr 4:138,065,839...138,095,623
Ensembl chr 4:138,065,735...138,095,303 		JBrowse link
G Dpyd dihydropyrimidine dehydrogenase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:6301357) MGI PMID:6301357 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Upb1 ureidopropionase, beta involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IDA (PMID:7744869) MGI PMID:7744869 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chr 2:58,456,329...58,685,858
Ensembl chr 2:58,457,310...58,682,983 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:126,856,131...126,859,839
Ensembl chr 7:126,856,131...126,859,881 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:8083224) MGI PMID:8083224 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO MGI GO_REF:0000008 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:6301357) MGI PMID:6301357 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Tymp thymidine phosphorylase involved_in IMP (PMID:12077348) MGI PMID:12077348 NCBI chr15:89,255,834...89,261,282
Ensembl chr15:89,256,134...89,261,242 		JBrowse link
G Upb1 ureidopropionase, beta involved_in ISO (PMID:15385443) MGI PMID:15385443 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IMP (PMID:12077348)
(PMID:15772079)		 MGI
UniProt		 PMID:12077348 PMID:15772079 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chr 7:126,856,131...126,859,839
Ensembl chr 7:126,856,131...126,859,881 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573 		JBrowse link
G Dpys dihydropyrimidinase involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866 		JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic involved_in IDA (PMID:10681516) MGI PMID:10681516 NCBI chr11:115,381,251...115,382,659
Ensembl chr11:115,381,246...115,382,688 		JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III involved_in ISO MGI GO_REF:0000008 NCBI chr 6:56,859,385...56,900,993
Ensembl chr 6:56,859,385...56,900,917 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within IDA (PMID:12234672) MGI PMID:12234672 NCBI chr11:59,730,233...59,767,359
Ensembl chr11:59,730,273...59,771,794 		JBrowse link
G Upb1 ureidopropionase, beta involved_in IDA (PMID:5472365) MGI PMID:5472365 NCBI chr10:75,242,745...75,277,513
Ensembl chr10:75,236,949...75,277,513 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IDA (PMID:14154460) MGI PMID:14154460 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA
IBA		 RGD
Ensembl
GO_Central		 PMID:1315924 PMID:3032103 GO_REF:0000033 GO_REF:0000096 GO_REF:0000107 RGD:2300191 RGD:2301218 NCBI chr 2:125,089,168...125,100,969
Ensembl chr 2:125,089,110...125,100,528 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        catabolic process 2901
          carbohydrate derivative catabolic process 278
            deoxyribose phosphate catabolic process 28
              pyrimidine deoxyribonucleotide catabolic process 12
                dCDP catabolic process 0
                dCMP catabolic process 8
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 7
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 7
                dUTP catabolic process 1
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 28635
    cellular process 18389
      metabolic process 11662
        primary metabolic process 10275
          nucleobase-containing compound metabolic process 5755
            nucleobase-containing small molecule metabolic process 712
              nucleoside phosphate metabolic process 682
                nucleotide metabolic process 530
                  deoxyribonucleotide metabolic process 49
                    2'-deoxyribonucleotide metabolic process 47
                      pyrimidine deoxyribonucleotide metabolic process 22
                        pyrimidine deoxyribonucleotide catabolic process 12
                          dCDP catabolic process 0
                          dCMP catabolic process 8
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 7
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 7
                          dUTP catabolic process 1
                          depyrimidination 0
paths to the root