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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation

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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:16,348,151...16,385,203
Ensembl chr16:16,348,346...16,384,490 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,376,738...36,215,388
Ensembl chr20:35,377,266...36,215,679 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:99,216,623...99,303,969
Ensembl chr 8:99,216,354...99,303,282 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,605,999...7,639,339
Ensembl chr19:7,605,537...7,639,017 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:43,510,752...43,545,133 JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:27,096,489...27,102,778
Ensembl chr 5:27,096,212...27,102,835 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G TYMP thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,997,337...33,001,558
Ensembl chr19:32,997,304...33,001,215 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:15772079) Ensembl
UniProt		 PMID:15772079 GO_REF:0000107 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chr 5:27,096,489...27,102,778
Ensembl chr 5:27,096,212...27,102,835 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:35,376,738...36,215,388
Ensembl chr20:35,377,266...36,215,679 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:99,216,623...99,303,969
Ensembl chr 8:99,216,354...99,303,282 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,531,820...46,533,763
Ensembl chr16:46,532,216...46,535,736 		JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12234672) Ensembl
MGI		 PMID:12234672 GO_REF:0000107 NCBI chr16:16,348,151...16,385,203
Ensembl chr16:16,348,346...16,384,490 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,605,999...7,639,339
Ensembl chr19:7,605,537...7,639,017 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:10,686,600...10,707,181
Ensembl chr21:10,686,093...10,706,347 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA		 RGD
UniProt
InterPro
TreeGrafter		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chr26:34,941,775...34,954,184
Ensembl chr26:34,940,702...34,953,166 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17042
    cellular process 16561
      metabolic process 10934
        catabolic process 2542
          carbohydrate derivative catabolic process 267
            deoxyribose phosphate catabolic process 25
              pyrimidine deoxyribonucleotide catabolic process 10
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 1
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 17042
    cellular process 16561
      metabolic process 10934
        primary metabolic process 9703
          nucleobase-containing compound metabolic process 5446
            nucleobase-containing small molecule metabolic process 638
              nucleoside phosphate metabolic process 608
                nucleotide metabolic process 472
                  deoxyribonucleotide metabolic process 45
                    2'-deoxyribonucleotide metabolic process 43
                      pyrimidine deoxyribonucleotide metabolic process 16
                        pyrimidine deoxyribonucleotide catabolic process 10
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 1
                          depyrimidination 0
paths to the root