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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleotide metabolic process
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Accession:GO:0009218 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleotide metabolism

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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936474:22,611,037...22,633,208
Ensembl chrNW_004936474:22,602,800...22,633,169 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004936470:5,889,393...5,988,558
Ensembl chrNW_004936470:5,888,469...5,988,525 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936598:3,819,239...3,846,692
Ensembl chrNW_004936598:3,817,994...3,843,241 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936487:18,267,878...18,271,406
Ensembl chrNW_004936487:18,267,885...18,271,423 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936481:19,505,477...19,560,035
Ensembl chrNW_004936481:19,505,459...19,560,083 		JBrowse link
G Uckl1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936514:11,144,641...11,156,470
Ensembl chrNW_004936514:11,144,026...11,156,455 		JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chrNW_004936478:8,785,984...8,834,776 JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chrNW_004936469:20,465,767...20,513,084
Ensembl chrNW_004936469:20,465,767...20,513,075 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:22,611,037...22,633,208
Ensembl chrNW_004936474:22,602,800...22,633,169 		JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936470:5,889,393...5,988,558
Ensembl chrNW_004936470:5,888,469...5,988,525 		JBrowse link
G LOC101972188 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:10,643,242...10,661,886
Ensembl chrNW_004936490:10,643,242...10,662,109 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chrNW_004936490:10,634,788...10,640,182
Ensembl chrNW_004936490:10,633,454...10,649,914 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936694:2,222,055...2,222,977
Ensembl chrNW_004936694:2,221,915...2,222,814 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:553,931...557,744 JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936531:7,296,565...7,318,628
Ensembl chrNW_004936531:7,296,556...7,318,682 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936529:88,929...96,207
Ensembl chrNW_004936529:88,949...96,236 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936481:17,280,661...17,438,496
Ensembl chrNW_004936481:17,280,464...17,438,084 		JBrowse link
G Nme9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936540:608,139...649,754
Ensembl chrNW_004936540:606,868...649,789 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:406,389...446,167
Ensembl chrNW_004936636:407,186...446,125 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:406,389...446,167
Ensembl chrNW_004936636:407,186...446,125 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936487:18,267,878...18,271,406
Ensembl chrNW_004936487:18,267,885...18,271,423 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936481:19,505,477...19,560,035
Ensembl chrNW_004936481:19,505,459...19,560,083 		JBrowse link
G Uckl1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936514:11,144,641...11,156,470
Ensembl chrNW_004936514:11,144,026...11,156,455 		JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (PMID:10369669), (PMID:21074248) UniProt PMID:10369669 PMID:21074248 NCBI chrNW_004936488:3,241,004...3,280,360
Ensembl chrNW_004936488:3,237,772...3,279,947 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:406,389...446,167
Ensembl chrNW_004936636:407,186...446,125 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase involved_in ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:6134725 GO_REF:0000107 GO_REF:0000118 RGD:5132277 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chrNW_004936683:1,432,004...1,454,004
Ensembl chrNW_004936683:1,431,965...1,454,991 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:430,274...432,027
Ensembl chrNW_004936594:430,506...432,095 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chrNW_004936469:20,465,767...20,513,084
Ensembl chrNW_004936469:20,465,767...20,513,075 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,543,295...6,564,575
Ensembl chrNW_004936474:6,543,220...6,566,308 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936487:18,267,878...18,271,406
Ensembl chrNW_004936487:18,267,885...18,271,423 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936481:19,505,477...19,560,035
Ensembl chrNW_004936481:19,505,459...19,560,083 		JBrowse link
G Uckl1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936514:11,144,641...11,156,470
Ensembl chrNW_004936514:11,144,026...11,156,455 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936478:22,508,602...22,531,604
Ensembl chrNW_004936478:22,508,559...22,531,898 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10659854 GO_REF:0000118 RGD:2303528 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G LOC101972188 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:10,643,242...10,661,886
Ensembl chrNW_004936490:10,643,242...10,662,109 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chrNW_004936490:10,634,788...10,640,182
Ensembl chrNW_004936490:10,633,454...10,649,914 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936694:2,222,055...2,222,977
Ensembl chrNW_004936694:2,221,915...2,222,814 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:553,931...557,744 JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936531:7,296,565...7,318,628
Ensembl chrNW_004936531:7,296,556...7,318,682 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936529:88,929...96,207
Ensembl chrNW_004936529:88,949...96,236 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936481:17,280,661...17,438,496
Ensembl chrNW_004936481:17,280,464...17,438,084 		JBrowse link
G Nme9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936540:608,139...649,754
Ensembl chrNW_004936540:606,868...649,789 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:406,389...446,167
Ensembl chrNW_004936636:407,186...446,125 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:497,391...517,011
Ensembl chrNW_004936503:496,965...516,888 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        pyrimidine-containing compound metabolic process 62
          pyrimidine nucleotide metabolic process 44
            pyrimidine ribonucleotide metabolic process 31
              CDP metabolic process + 1
              CMP metabolic process + 10
              CTP metabolic process + 15
              TDP metabolic process + 0
              TMP metabolic process + 0
              TTP metabolic process + 0
              UDP metabolic process + 7
              UMP metabolic process + 14
              UTP metabolic process + 11
              pyrimidine ribonucleotide biosynthetic process + 21
              pyrimidine ribonucleotide catabolic process + 10
              pyrimidine ribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        primary metabolic process 10066
          nucleobase-containing compound metabolic process 6200
            nucleobase-containing small molecule metabolic process 601
              nucleoside phosphate metabolic process 575
                nucleotide metabolic process 437
                  ribonucleotide metabolic process 311
                    pyrimidine ribonucleotide metabolic process 31
                      CDP metabolic process + 1
                      CMP metabolic process + 10
                      CTP metabolic process + 15
                      TDP metabolic process + 0
                      TMP metabolic process + 0
                      TTP metabolic process + 0
                      UDP metabolic process + 7
                      UMP metabolic process + 14
                      UTP metabolic process + 11
                      pyrimidine ribonucleotide biosynthetic process + 21
                      pyrimidine ribonucleotide catabolic process + 10
                      pyrimidine ribonucleotide interconversion 0
paths to the root