Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleotide metabolic process
go back to main search page
Accession:GO:0009218 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleotide metabolism


show annotations for term's descendants           Sort by:
'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr15:2,067,767...2,093,014
Ensembl chr15:2,067,763...2,093,014 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:12,759,998...12,867,707
Ensembl chr  X:12,760,015...12,865,111 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090 		JBrowse link
G LOC479668 haptoglobin-like involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:77,795,183...77,800,034 JBrowse link
G TRIM54 tripartite motif containing 54 involved_in IEA UniProt GO_REF:0000041 NCBI chr17:21,257,660...21,278,410
Ensembl chr17:21,257,706...21,278,274 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA		 RGD
GO_Central		 PMID:3010881 GO_REF:0000033 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr13:60,206,742...60,236,338
Ensembl chr13:60,205,937...60,235,678 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675 		JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463 		JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chr14:45,076,487...45,132,000
Ensembl chr14:45,077,099...45,131,905 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr18:108,215...120,213 JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:2,067,767...2,093,014
Ensembl chr15:2,067,763...2,093,014 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr  X:12,759,998...12,867,707
Ensembl chr  X:12,760,015...12,865,111 		JBrowse link
G LOC102151128 nucleoside diphosphate kinase, mitochondrial-like involved_in IEA InterPro GO_REF:0000002 NCBI chr22:2,150,639...2,152,716 JBrowse link
G LOC102155863 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:38,816,465...38,817,539 JBrowse link
G LOC102156116 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr21:5,535,495...5,536,620 JBrowse link
G LOC483943 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:10,046,217...10,046,745 JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955 		JBrowse link
G NME2 non-metastatic cells 2, protein (NM23B) expressed in involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr 9:27,002,114...27,005,740
Ensembl chr 9:27,001,733...27,015,934 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:40,119,443...40,122,418 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr11:25,772,162...25,792,856
Ensembl chr11:25,772,157...25,792,176 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:40,769,394...40,778,802
Ensembl chr20:40,769,501...40,776,496 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 7:29,201,273...29,464,072
Ensembl chr 7:29,206,307...29,463,467 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:34,515,003...34,537,386
Ensembl chr23:34,483,520...34,537,312 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,565,173...12,601,152
Ensembl chr28:12,564,727...12,600,240 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr25:34,032,104...34,067,772
Ensembl chr25:34,032,055...34,063,281 		JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:12,565,173...12,601,152
Ensembl chr28:12,564,727...12,600,240 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860 		JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090 		JBrowse link
G LOC479668 haptoglobin-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:77,795,183...77,800,034 JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635 		JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:3010881 GO_REF:0000033 GO_REF:0000107 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr25:34,032,104...34,067,772
Ensembl chr25:34,032,055...34,063,281 		JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (PMID:10369669), (PMID:21074248) UniProt PMID:10369669 PMID:21074248 NCBI chr 8:47,193,463...47,245,865
Ensembl chr 8:47,196,439...47,229,964 		JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:12,565,173...12,601,152
Ensembl chr28:12,564,727...12,600,240 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:6134725 GO_REF:0000033 GO_REF:0000107 RGD:5132277 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:58,570,623...58,576,980
Ensembl chr  X:58,543,425...58,575,926 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:14715930), (PMID:7744869) MGI PMID:7744869 PMID:14715930 NCBI chr18:108,215...120,213 JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,305,328...78,327,229
Ensembl chr 2:78,304,726...78,327,247 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:11956089) MGI PMID:11956089 NCBI chr18:108,215...120,213 JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:10659854 RGD:2303528 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635 		JBrowse link
G LOC102151128 nucleoside diphosphate kinase, mitochondrial-like involved_in IEA InterPro GO_REF:0000002 NCBI chr22:2,150,639...2,152,716 JBrowse link
G LOC102155863 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:38,816,465...38,817,539 JBrowse link
G LOC102156116 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr21:5,535,495...5,536,620 JBrowse link
G LOC483943 nucleoside diphosphate kinase A-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:10,046,217...10,046,745 JBrowse link
G NME1 non-metastatic cells 1, protein (NM23A) expressed in involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:26,990,336...26,998,895
Ensembl chr 9:26,990,469...26,998,955 		JBrowse link
G NME2 non-metastatic cells 2, protein (NM23B) expressed in involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr 9:27,002,114...27,005,740
Ensembl chr 9:27,001,733...27,015,934 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:40,119,443...40,122,418 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr11:25,772,162...25,792,856
Ensembl chr11:25,772,157...25,792,176 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:40,769,394...40,778,802
Ensembl chr20:40,769,501...40,776,496 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 7:29,201,273...29,464,072
Ensembl chr 7:29,206,307...29,463,467 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:34,515,003...34,537,386
Ensembl chr23:34,483,520...34,537,312 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,565,173...12,601,152
Ensembl chr28:12,564,727...12,600,240 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC480491 GTP:AMP phosphotransferase AK3, mitochondrial involved_in ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chr 9:10,282,452...10,283,479 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22103
    cellular process 21633
      metabolic process 15381
        pyrimidine-containing compound metabolic process 70
          pyrimidine nucleotide metabolic process 46
            pyrimidine ribonucleotide metabolic process 35
              CDP metabolic process + 1
              CMP metabolic process + 8
              CTP metabolic process + 18
              TDP metabolic process + 0
              TMP metabolic process + 0
              TTP metabolic process + 0
              UDP metabolic process + 7
              UMP metabolic process + 15
              UTP metabolic process + 14
              pyrimidine ribonucleotide biosynthetic process + 26
              pyrimidine ribonucleotide catabolic process + 9
              pyrimidine ribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 22103
    cellular process 21633
      metabolic process 15381
        primary metabolic process 13982
          nucleobase-containing compound metabolic process 9612
            nucleobase-containing small molecule metabolic process 705
              nucleoside phosphate metabolic process 673
                nucleotide metabolic process 533
                  ribonucleotide metabolic process 404
                    pyrimidine ribonucleotide metabolic process 35
                      CDP metabolic process + 1
                      CMP metabolic process + 8
                      CTP metabolic process + 18
                      TDP metabolic process + 0
                      TMP metabolic process + 0
                      TTP metabolic process + 0
                      UDP metabolic process + 7
                      UMP metabolic process + 15
                      UTP metabolic process + 14
                      pyrimidine ribonucleotide biosynthetic process + 26
                      pyrimidine ribonucleotide catabolic process + 9
                      pyrimidine ribonucleotide interconversion 0
paths to the root