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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleotide metabolic process
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Accession:GO:0009218 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleotide metabolism

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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555)
(PMID:33771897)		 MGI PMID:25678555 PMID:33771897 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341)
(PMID:6154574)		 MGI PMID:2419341 PMID:6154574 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307 		JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chrNW_004955617:240,132...293,278
Ensembl chrNW_004955617:239,631...293,178 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in ISO (PMID:16179339)
(PMID:24870241)		 UniProt PMID:16179339 PMID:24870241 NCBI chrNW_004955537:773,664...811,084
Ensembl chrNW_004955537:774,002...813,254 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in ISO (PMID:11306702) UniProt PMID:11306702 NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in ISO (PMID:11306702) UniProt PMID:11306702 NCBI chrNW_004955462:10,815,496...10,925,364
Ensembl chrNW_004955462:10,815,389...10,886,227 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) MGI PMID:25678555 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO (PMID:11912132) RGD
MGI		 PMID:3010881 PMID:11912132 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341)
(PMID:6154574)		 MGI PMID:2419341 PMID:6154574 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452), (PMID:9556635) UniProt PMID:9556635 PMID:10858452 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (PMID:10369669), (PMID:21074248) UniProt PMID:10369669 PMID:21074248 NCBI chrNW_004955523:1,407,812...1,441,829
Ensembl chrNW_004955523:1,421,749...1,441,829 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase involved_in ISO (PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911) RGD
UniProt		 PMID:6134725 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 RGD:5132277 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chrNW_004955562:1,385,617...1,415,277
Ensembl chrNW_004955562:1,385,611...1,415,336 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138 		JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) MGI PMID:5472365 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14715930), (PMID:7744869) MGI PMID:7744869 PMID:14715930 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (PMID:6498945) MGI PMID:6498945 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in ISO (PMID:11306702)
(PMID:8951040)		 UniProt
MGI		 PMID:8951040 PMID:11306702 NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in ISO (PMID:11306702), (PMID:27239701) MGI PMID:11306702 PMID:27239701 NCBI chrNW_004955462:10,815,496...10,925,364
Ensembl chrNW_004955462:10,815,389...10,886,227 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:11956089) MGI PMID:11956089 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:10659854 RGD:2303528 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 involved_in ISO (PMID:11485571) BHF-UCL PMID:11485571 NCBI chrNW_004955434:8,998,357...9,010,468
Ensembl chrNW_004955434:9,000,158...9,011,250 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12563
    cellular process 12002
      metabolic process 7932
        pyrimidine-containing compound metabolic process 48
          pyrimidine nucleotide metabolic process 32
            pyrimidine ribonucleotide metabolic process 20
              CDP metabolic process + 1
              CMP metabolic process + 6
              CTP metabolic process + 5
              TDP metabolic process + 0
              TMP metabolic process + 0
              TTP metabolic process + 0
              UDP metabolic process + 6
              UMP metabolic process + 13
              UTP metabolic process + 3
              pyrimidine ribonucleotide biosynthetic process + 10
              pyrimidine ribonucleotide catabolic process + 10
              pyrimidine ribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 12563
    cellular process 12002
      metabolic process 7932
        primary metabolic process 6950
          nucleobase-containing compound metabolic process 3906
            nucleobase-containing small molecule metabolic process 489
              nucleoside phosphate metabolic process 465
                nucleotide metabolic process 359
                  ribonucleotide metabolic process 255
                    pyrimidine ribonucleotide metabolic process 20
                      CDP metabolic process + 1
                      CMP metabolic process + 6
                      CTP metabolic process + 5
                      TDP metabolic process + 0
                      TMP metabolic process + 0
                      TTP metabolic process + 0
                      UDP metabolic process + 6
                      UMP metabolic process + 13
                      UTP metabolic process + 3
                      pyrimidine ribonucleotide biosynthetic process + 10
                      pyrimidine ribonucleotide catabolic process + 10
                      pyrimidine ribonucleotide interconversion 0
paths to the root