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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleotide metabolic process
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Accession:GO:0009218 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleotide metabolism


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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:40,275,581...40,308,421
Ensembl chr 1:41,592,509...41,624,455 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:9,209,727...9,332,641
Ensembl chr  X:16,579,409...16,693,184 		JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000041 NCBI chr16:52,977,879...52,994,496
Ensembl chr16:71,854,238...71,870,673 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 Ensembl chr20:61,860,084...61,876,194 JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chr 7:33,608,746...33,657,380
Ensembl chr 7:34,009,467...34,057,740 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:40,275,581...40,308,421
Ensembl chr 1:41,592,509...41,624,455 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:9,209,727...9,332,641
Ensembl chr  X:16,579,409...16,693,184 		JBrowse link
G LOC129397988 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G LOC129398008 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:45,243,588...45,252,135
Ensembl chr17:50,113,622...50,131,636 		JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IEA
ISO		 InterPro
RGD		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:45,255,982...45,261,541 JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:392,694...394,106
Ensembl chr16:1,822,719...1,824,147 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:389,068...393,976 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:133,493,930...133,517,906
Ensembl chr 5:139,628,678...139,651,372 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,206,365...48,217,618
Ensembl chr 3:49,290,069...49,299,831 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:135,330,855...135,361,599
Ensembl chr 3:142,780,510...142,808,817 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150 		JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 Ensembl chr20:61,860,084...61,876,194 JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:52,977,879...52,994,496
Ensembl chr16:71,854,238...71,870,673 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO (PMID:11912132) RGD
MGI		 PMID:3010881 PMID:11912132 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in ISO (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chr16:52,977,879...52,994,496
Ensembl chr16:71,854,238...71,870,673 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150 		JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (PMID:10369669), (PMID:21074248) UniProt PMID:10369669 PMID:21074248 NCBI chr14:54,522,428...54,578,501
Ensembl chr14:73,376,684...73,410,468 		JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:6134725 GO_REF:0000107 GO_REF:0000118 RGD:5132277 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:64,524,889...64,561,439
Ensembl chr  X:74,639,179...74,675,221 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chr17:69,077,021...69,078,998 JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,538,696...19,568,008
Ensembl chr 1:20,583,441...20,612,711 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 Ensembl chr20:61,860,084...61,876,194 JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10659854 GO_REF:0000118 RGD:2303528 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G LOC129397988 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G LOC129398008 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:45,243,588...45,252,135
Ensembl chr17:50,113,622...50,131,636 		JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IEA
ISO		 InterPro
RGD		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:45,255,982...45,261,541 JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:392,694...394,106
Ensembl chr16:1,822,719...1,824,147 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:389,068...393,976 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:133,493,930...133,517,906
Ensembl chr 5:139,628,678...139,651,372 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,206,365...48,217,618
Ensembl chr 3:49,290,069...49,299,831 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:135,330,855...135,361,599
Ensembl chr 3:142,780,510...142,808,817 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,541,984...4,576,341
Ensembl chr 9:4,732,847...4,762,900 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19447
    cellular process 19000
      metabolic process 12941
        pyrimidine-containing compound metabolic process 67
          pyrimidine nucleotide metabolic process 46
            pyrimidine ribonucleotide metabolic process 32
              CDP metabolic process + 1
              CMP metabolic process + 9
              CTP metabolic process + 17
              TDP metabolic process + 0
              TMP metabolic process + 0
              TTP metabolic process + 0
              UDP metabolic process + 7
              UMP metabolic process + 14
              UTP metabolic process + 13
              pyrimidine ribonucleotide biosynthetic process + 23
              pyrimidine ribonucleotide catabolic process + 10
              pyrimidine ribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 19447
    cellular process 19000
      metabolic process 12941
        primary metabolic process 11364
          nucleobase-containing compound metabolic process 7261
            nucleobase-containing small molecule metabolic process 627
              nucleoside phosphate metabolic process 600
                nucleotide metabolic process 465
                  ribonucleotide metabolic process 338
                    pyrimidine ribonucleotide metabolic process 32
                      CDP metabolic process + 1
                      CMP metabolic process + 9
                      CTP metabolic process + 17
                      TDP metabolic process + 0
                      TMP metabolic process + 0
                      TTP metabolic process + 0
                      UDP metabolic process + 7
                      UMP metabolic process + 14
                      UTP metabolic process + 13
                      pyrimidine ribonucleotide biosynthetic process + 23
                      pyrimidine ribonucleotide catabolic process + 10
                      pyrimidine ribonucleotide interconversion 0
paths to the root