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ONTOLOGY REPORT - ANNOTATIONS


Term:cyclic nucleotide catabolic process
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Accession:GO:0009214 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
Synonyms:exact_synonym: cyclic nucleotide breakdown;   cyclic nucleotide catabolism;   cyclic nucleotide degradation


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cyclic nucleotide catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:88,490,798...88,497,357
Ensembl chr10:88,490,798...88,497,356
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde4a phosphodiesterase 4A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 8:22,189,533...22,234,036
Ensembl chr 8:22,189,600...22,233,748
JBrowse link
G Pde4b phosphodiesterase 4B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:121,759,236...122,136,814
Ensembl chr 5:121,952,977...122,136,814
JBrowse link
G Pde4c phosphodiesterase 4C IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:20,442,305...20,466,386
Ensembl chr16:20,442,609...20,460,959
Ensembl chr16:20,442,609...20,460,959
JBrowse link
G Pde4d phosphodiesterase 4D IEA
IBA
ISO
GO_REF:0000041
PMID:21873635
(PMID:20819076)
UniProt
RGD
PMID:20819076, PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 2:40,219,999...41,468,551
Ensembl chr 2:40,554,146...41,464,264
JBrowse link
G Pde7a phosphodiesterase 7A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:104,042,124...104,134,101
Ensembl chr 2:104,045,811...104,134,101
JBrowse link
G Pde8a phosphodiesterase 8A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:143,036,083...143,160,395
Ensembl chr 1:143,036,218...143,159,433
JBrowse link
G Pde8b phosphodiesterase 8B IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:24,718,548...24,955,533
Ensembl chr 2:24,719,976...24,923,128
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde10a phosphodiesterase 10A IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:52,360,296...52,544,448
Ensembl chr 1:52,360,296...52,544,450
JBrowse link
G Pde1a phosphodiesterase 1A IMP RGD PMID:16514069 RGD:2312521 NCBI chr 3:66,803,247...67,263,658
Ensembl chr 3:66,803,247...66,885,094
JBrowse link
G Pde2a phosphodiesterase 2A IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:4420377|PMID:19632989)
(PMID:19828435)
Ensembl
RGD
PMID:19632989, PMID:19828435, PMID:21873635 GO_REF:0000107, MGI:MGI:4420377, RGD:13792537 NCBI chr 1:166,534,643...166,626,158
Ensembl chr 1:166,534,643...166,626,158
JBrowse link
G Pde5a phosphodiesterase 5A ISO
IEA
(MGI:MGI:2450821|PMID:12554648)
GO_REF:0000107
GO_REF:0000041
RGD
Ensembl
UniProt
PMID:12554648 GO_REF:0000041, GO_REF:0000107, MGI:MGI:2450821 NCBI chr 2:226,899,604...227,044,916
Ensembl chr 2:226,900,619...227,041,576
JBrowse link
G Pde9a phosphodiesterase 9A IEA
ISO
ISS
IBA
GO_REF:0000041
(PMID:25799991)
GO_REF:0000024
(MGI:MGI:1266874|PMID:9624145), (MGI:MGI:5634842|PMID:25799991)
PMID:21873635
UniProt
RGD
PMID:9624145, PMID:25799991, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:MGI:1266874, MGI:MGI:5634842, RGD:13792537 NCBI chr20:10,123,624...10,216,325
Ensembl chr20:10,123,651...10,216,548
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      organic substance metabolic process 11651
        organophosphate metabolic process 941
          nucleoside phosphate metabolic process 511
            nucleotide metabolic process 504
              nucleotide catabolic process 54
                cyclic nucleotide catabolic process 13
                  cAMP catabolic process 8
                  cGMP catabolic process 5
                  regulation of cyclic nucleotide catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 511
                nucleotide metabolic process 504
                  nucleotide catabolic process 54
                    cyclic nucleotide catabolic process 13
                      cAMP catabolic process 8
                      cGMP catabolic process 5
                      regulation of cyclic nucleotide catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.