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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside triphosphate biosynthetic process
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Accession:GO:0009209 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside triphosphate anabolism;   pyrimidine ribonucleoside triphosphate biosynthesis;   pyrimidine ribonucleoside triphosphate formation;   pyrimidine ribonucleoside triphosphate synthesis

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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004624892:376,800...421,850 JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004624829:1,373,568...1,438,052
Ensembl chrNW_004624829:1,386,544...1,438,052 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624892:376,800...421,850 JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624829:1,373,568...1,438,052
Ensembl chrNW_004624829:1,386,544...1,438,052 		JBrowse link
G LOC101723532 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:6,863,525...6,892,902
Ensembl chrNW_004624795:6,863,384...6,892,898 		JBrowse link
G LOC106007568 nucleoside diphosphate kinase B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:6,895,226...6,899,375
Ensembl chrNW_004624795:6,894,687...6,899,371 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624913:479,893...481,023
Ensembl chrNW_004624913:480,190...481,023 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624913:1,234,292...1,237,602
Ensembl chrNW_004624913:1,234,191...1,237,602 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624743:30,925,210...30,950,129
Ensembl chrNW_004624743:30,925,445...30,950,114 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:73,414,124...73,421,161
Ensembl chrNW_004624730:73,414,798...73,419,261 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624826:7,077,885...7,300,398
Ensembl chrNW_004624826:7,078,140...7,258,997 		JBrowse link
G Nme9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:14,804,025...14,831,271
Ensembl chrNW_004624730:14,804,338...14,831,319 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624760:4,490,118...4,494,707
Ensembl chrNW_004624760:4,490,086...4,494,924 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624826:4,163,830...4,243,048
Ensembl chrNW_004624826:4,163,798...4,229,640 		JBrowse link
G Uckl1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624741:29,568,980...29,581,923
Ensembl chrNW_004624741:29,566,007...29,581,895 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:10659854 GO_REF:0000118 RGD:2303528 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925 		JBrowse link
G LOC101723532 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:6,863,525...6,892,902
Ensembl chrNW_004624795:6,863,384...6,892,898 		JBrowse link
G LOC106007568 nucleoside diphosphate kinase B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:6,895,226...6,899,375
Ensembl chrNW_004624795:6,894,687...6,899,371 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624913:479,893...481,023
Ensembl chrNW_004624913:480,190...481,023 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624913:1,234,292...1,237,602
Ensembl chrNW_004624913:1,234,191...1,237,602 		JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624743:30,925,210...30,950,129
Ensembl chrNW_004624743:30,925,445...30,950,114 		JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:73,414,124...73,421,161
Ensembl chrNW_004624730:73,414,798...73,419,261 		JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624826:7,077,885...7,300,398
Ensembl chrNW_004624826:7,078,140...7,258,997 		JBrowse link
G Nme9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:14,804,025...14,831,271
Ensembl chrNW_004624730:14,804,338...14,831,319 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17808
    cellular process 17314
      metabolic process 11091
        biosynthetic process 8036
          nucleobase-containing compound biosynthetic process 5008
            nucleoside phosphate biosynthetic process 278
              nucleoside triphosphate biosynthetic process 82
                pyrimidine nucleoside triphosphate biosynthetic process 18
                  pyrimidine ribonucleoside triphosphate biosynthetic process 14
                    CTP biosynthetic process + 13
                    TTP biosynthetic process 0
                    UTP biosynthetic process 9
Path 2
Term Annotations click to browse term
  biological_process 17808
    cellular process 17314
      metabolic process 11091
        primary metabolic process 9922
          nucleobase-containing compound metabolic process 5905
            nucleobase-containing small molecule metabolic process 616
              nucleoside phosphate metabolic process 586
                nucleoside phosphate biosynthetic process 278
                  nucleoside triphosphate biosynthetic process 82
                    ribonucleoside triphosphate biosynthetic process 76
                      pyrimidine ribonucleoside triphosphate biosynthetic process 14
                        CTP biosynthetic process + 13
                        TTP biosynthetic process 0
                        UTP biosynthetic process 9
paths to the root