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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside triphosphate metabolic process
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Accession:GO:0009208 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside triphosphate metabolism



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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:40,979,696...41,012,565
Ensembl chr 1:40,979,300...41,012,565
JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IMP
IEA
IBA
IDA
(PMID:24870241)
(PMID:16179339)
UniProt
TreeGrafter
GO_Central
InterPro
PMID:16179339 PMID:24870241 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:40,979,696...41,012,565
Ensembl chr 1:40,979,300...41,012,565
JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA
IBA
InterPro
TreeGrafter
GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,162,168
Ensembl chr17:51,153,559...51,162,428
JBrowse link
G NME1-NME2 NME1-NME2 readthrough involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,171,744
Ensembl chr17:51,153,590...51,171,744
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA
RGD
InterPro
PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:51,165,536...51,171,744
Ensembl chr17:51,165,435...51,171,744
JBrowse link
G NME2P1 NME2 pseudogene 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:120,282,218...120,282,856
Ensembl chr12:120,282,303...120,282,716
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:1,770,320...1,771,543
Ensembl chr16:1,770,320...1,771,561
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:396,729...400,754
Ensembl chr16:396,725...410,367
JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:138,115,175...138,139,428
Ensembl chr 5:138,115,175...138,139,443
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,288,402...48,301,367
Ensembl chr 3:48,290,722...48,301,685
JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 1:169,132,531...169,367,797
Ensembl chr 1:169,132,531...169,367,948
JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,261,436...138,329,851
Ensembl chr 3:138,261,437...138,329,886
JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IDA (PMID:11278936) UniProt PMID:11278936 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IDA
IBA
(PMID:10858452) UniProt
GO_Central
PMID:10858452 GO_REF:0000033 NCBI chr 8:23,429,162...23,457,647
Ensembl chr 8:23,385,783...23,457,695
JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA
IDA
(PMID:11306702) UniProt PMID:11306702 GO_REF:0000041 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA
IDA
(PMID:11306702) UniProt PMID:11306702 GO_REF:0000041 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
Ensembl
PMID:10659854 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:2303528 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,162,168
Ensembl chr17:51,153,559...51,162,428
JBrowse link
G NME1-NME2 NME1-NME2 readthrough involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,171,744
Ensembl chr17:51,153,590...51,171,744
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA
RGD
InterPro
PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:51,165,536...51,171,744
Ensembl chr17:51,165,435...51,171,744
JBrowse link
G NME2P1 NME2 pseudogene 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:120,282,218...120,282,856
Ensembl chr12:120,282,303...120,282,716
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:1,770,320...1,771,543
Ensembl chr16:1,770,320...1,771,561
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:396,729...400,754
Ensembl chr16:396,725...410,367
JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:138,115,175...138,139,428
Ensembl chr 5:138,115,175...138,139,443
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,288,402...48,301,367
Ensembl chr 3:48,290,722...48,301,685
JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 1:169,132,531...169,367,797
Ensembl chr 1:169,132,531...169,367,948
JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,261,436...138,329,851
Ensembl chr 3:138,261,437...138,329,886
JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IDA (PMID:11278936) UniProt PMID:11278936 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 involved_in IDA (PMID:11485571) BHF-UCL PMID:11485571 NCBI chr 9:4,709,556...4,742,043
Ensembl chr 9:4,709,556...4,742,043
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19761
    metabolic process 12497
      small molecule metabolic process 2022
        nucleobase-containing small molecule metabolic process 745
          nucleoside phosphate metabolic process 667
            nucleoside triphosphate metabolic process 307
              pyrimidine nucleoside triphosphate metabolic process 26
                pyrimidine ribonucleoside triphosphate metabolic process 19
                  CTP metabolic process + 17
                  TTP metabolic process + 0
                  UTP metabolic process + 13
                  pyrimidine ribonucleoside triphosphate biosynthetic process + 16
                  pyrimidine ribonucleoside triphosphate catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 19761
    metabolic process 12497
      cellular metabolic process 11163
        cellular nitrogen compound metabolic process 7287
          nucleobase-containing compound metabolic process 6567
            nucleobase-containing small molecule metabolic process 745
              nucleoside phosphate metabolic process 667
                nucleoside triphosphate metabolic process 307
                  ribonucleoside triphosphate metabolic process 289
                    pyrimidine ribonucleoside triphosphate metabolic process 19
                      CTP metabolic process + 17
                      TTP metabolic process + 0
                      UTP metabolic process + 13
                      pyrimidine ribonucleoside triphosphate biosynthetic process + 16
                      pyrimidine ribonucleoside triphosphate catabolic process + 1
paths to the root