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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside triphosphate metabolic process
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Accession:GO:0009208 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside triphosphate metabolism

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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr20:91,905,452...91,938,188
Ensembl chr20:91,901,771...91,937,819 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:15,027,539...15,143,812
Ensembl chr  X:15,025,876...15,143,615 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:91,905,452...91,938,188
Ensembl chr20:91,901,771...91,937,819 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:15,027,539...15,143,812
Ensembl chr  X:15,025,876...15,143,615 		JBrowse link
G LOC103242911 nucleoside diphosphate kinase B involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr16:42,176,690...42,182,041
Ensembl chr16:42,176,524...42,182,019 		JBrowse link
G LOC103242912 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chr16:42,186,039...42,195,608
Ensembl chr16:42,185,260...42,195,616 		JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:1,679,361...1,680,796
Ensembl chr 5:1,679,549...1,680,547 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:337,533...341,052
Ensembl chr 5:337,562...341,205 		JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:40,785,234...40,808,391
Ensembl chr23:40,785,255...40,807,767 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:9,685,583...9,692,993
Ensembl chr22:9,681,953...9,692,172 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr25:59,685,437...59,899,458
Ensembl chr25:59,685,531...59,898,677 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:52,212,974...52,271,540
Ensembl chr15:52,212,905...52,242,271 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chr 9:92,722,960...92,769,563
Ensembl chr 9:92,723,015...92,768,558 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chr 8:21,528,520...21,574,330
Ensembl chr 8:21,543,888...21,574,311 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr12:6,612,306...6,634,326
Ensembl chr12:6,612,378...6,618,968 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr25:62,974,515...63,059,436
Ensembl chr25:62,974,257...63,059,414 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 2:282,267...299,148
Ensembl chr 2:282,365...299,099 		JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10659854 GO_REF:0000118 RGD:2303528 NCBI chr14:80,371,154...80,399,193
Ensembl chr14:80,371,096...80,398,914 		JBrowse link
G LOC103242911 nucleoside diphosphate kinase B involved_in ISO
IEA		 RGD
InterPro		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr16:42,176,690...42,182,041
Ensembl chr16:42,176,524...42,182,019 		JBrowse link
G LOC103242912 nucleoside diphosphate kinase A involved_in IEA InterPro GO_REF:0000002 NCBI chr16:42,186,039...42,195,608
Ensembl chr16:42,185,260...42,195,616 		JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:1,679,361...1,680,796
Ensembl chr 5:1,679,549...1,680,547 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:337,533...341,052
Ensembl chr 5:337,562...341,205 		JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:40,785,234...40,808,391
Ensembl chr23:40,785,255...40,807,767 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:9,685,583...9,692,993
Ensembl chr22:9,681,953...9,692,172 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr25:59,685,437...59,899,458
Ensembl chr25:59,685,531...59,898,677 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:52,212,974...52,271,540
Ensembl chr15:52,212,905...52,242,271 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chr 9:92,722,960...92,769,563
Ensembl chr 9:92,723,015...92,768,558 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:74,801,673...74,832,838
Ensembl chr12:74,801,671...74,835,475 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17106
    cellular process 16633
      metabolic process 11190
        phosphorus metabolic process 2596
          phosphate-containing compound metabolic process 2592
            nucleoside phosphate metabolic process 600
              nucleoside triphosphate metabolic process 257
                pyrimidine nucleoside triphosphate metabolic process 23
                  pyrimidine ribonucleoside triphosphate metabolic process 17
                    CTP metabolic process + 15
                    TTP metabolic process + 0
                    UTP metabolic process + 11
                    pyrimidine ribonucleoside triphosphate biosynthetic process + 14
                    pyrimidine ribonucleoside triphosphate catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 17106
    cellular process 16633
      metabolic process 11190
        primary metabolic process 10005
          nucleobase-containing compound metabolic process 5387
            nucleobase-containing small molecule metabolic process 631
              nucleoside phosphate metabolic process 600
                nucleoside triphosphate metabolic process 257
                  ribonucleoside triphosphate metabolic process 239
                    pyrimidine ribonucleoside triphosphate metabolic process 17
                      CTP metabolic process + 15
                      TTP metabolic process + 0
                      UTP metabolic process + 11
                      pyrimidine ribonucleoside triphosphate biosynthetic process + 14
                      pyrimidine ribonucleoside triphosphate catabolic process + 1
paths to the root