Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside triphosphate metabolic process
go back to main search page
Accession:GO:0009208 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside triphosphate metabolism


show annotations for term's descendants           Sort by:
'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:40,275,581...40,308,421
Ensembl chr 1:41,592,509...41,624,455 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:9,209,727...9,332,641
Ensembl chr  X:16,579,409...16,693,184 		JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:40,275,581...40,308,421
Ensembl chr 1:41,592,509...41,624,455 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:9,209,727...9,332,641
Ensembl chr  X:16,579,409...16,693,184 		JBrowse link
G LOC129397988 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G LOC129398008 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:45,243,588...45,252,135
Ensembl chr17:50,113,622...50,131,636 		JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IEA
ISO		 InterPro
RGD		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:45,255,982...45,261,541 JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:392,694...394,106
Ensembl chr16:1,822,719...1,824,147 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:389,068...393,976 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:133,493,930...133,517,906
Ensembl chr 5:139,628,678...139,651,372 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,206,365...48,217,618
Ensembl chr 3:49,290,069...49,299,831 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:135,330,855...135,361,599
Ensembl chr 3:142,780,510...142,808,817 		JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150 		JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 Ensembl chr20:61,860,084...61,876,194 JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10659854 GO_REF:0000118 RGD:2303528 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G LOC129397988 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G LOC129398008 nucleoside diphosphate kinase 7-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:45,243,588...45,252,135
Ensembl chr17:50,113,622...50,131,636 		JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in IEA
ISO		 InterPro
RGD		 PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:45,255,982...45,261,541 JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:392,694...394,106
Ensembl chr16:1,822,719...1,824,147 		JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:389,068...393,976 JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:133,493,930...133,517,906
Ensembl chr 5:139,628,678...139,651,372 		JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,206,365...48,217,618
Ensembl chr 3:49,290,069...49,299,831 		JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:135,330,855...135,361,599
Ensembl chr 3:142,780,510...142,808,817 		JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,276,454...96,323,287
Ensembl chr10:99,768,566...99,813,568 		JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,541,984...4,576,341
Ensembl chr 9:4,732,847...4,762,900 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16786
    cellular process 16372
      metabolic process 11065
        phosphorus metabolic process 2542
          phosphate-containing compound metabolic process 2539
            nucleoside phosphate metabolic process 590
              nucleoside triphosphate metabolic process 250
                pyrimidine nucleoside triphosphate metabolic process 24
                  pyrimidine ribonucleoside triphosphate metabolic process 19
                    CTP metabolic process + 17
                    TTP metabolic process + 0
                    UTP metabolic process + 13
                    pyrimidine ribonucleoside triphosphate biosynthetic process + 16
                    pyrimidine ribonucleoside triphosphate catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 16786
    cellular process 16372
      metabolic process 11065
        primary metabolic process 9784
          nucleobase-containing compound metabolic process 5295
            nucleobase-containing small molecule metabolic process 619
              nucleoside phosphate metabolic process 590
                nucleoside triphosphate metabolic process 250
                  ribonucleoside triphosphate metabolic process 234
                    pyrimidine ribonucleoside triphosphate metabolic process 19
                      CTP metabolic process + 17
                      TTP metabolic process + 0
                      UTP metabolic process + 13
                      pyrimidine ribonucleoside triphosphate biosynthetic process + 16
                      pyrimidine ribonucleoside triphosphate catabolic process + 1
paths to the root