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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside triphosphate metabolic process
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Accession:GO:0009208 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside triphosphate metabolism



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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps2 CTP synthase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 involved_in ISO (PMID:16179339), (PMID:24870241) RGD PMID:16179339 PMID:24870241 NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180
JBrowse link
G Ctps2 CTP synthase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733
JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,104,907...15,113,281
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:78,898,097...78,903,600
Ensembl chr10:78,897,770...78,903,538
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:26,163,558...26,180,742
Ensembl chr18:26,163,555...26,180,794
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) RGD PMID:11278936 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in ISO
IEA
(PMID:11306702)
GO_REF:0000041
RGD
UniProt
PMID:11306702 GO_REF:0000041 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465
JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA
ISO
ISS
GO_REF:0000041
(PMID:11306702)
GO_REF:0000024
UniProt
RGD
PMID:11306702 GO_REF:0000024 GO_REF:0000041 NCBI chr13:79,380,807...79,438,352
Ensembl chr13:79,383,846...79,438,352
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10659854 PMID:21873635 RGD:2303528, RGD:13792537 NCBI chr 6:25,292,133...25,315,176
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,104,907...15,113,281
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:78,898,097...78,903,600
Ensembl chr10:78,897,770...78,903,538
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme5 NME/NM23 family member 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:26,163,558...26,180,742
Ensembl chr18:26,163,555...26,180,794
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
JBrowse link
G Nme7 NME/NM23 family member 7 involved_in IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) RGD PMID:11278936 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 involved_in ISO
IEA
(PMID:11485571)
GO_REF:0000107
RGD
Ensembl
PMID:11485571 GO_REF:0000107 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      small molecule metabolic process 1805
        nucleobase-containing small molecule metabolic process 593
          nucleoside phosphate metabolic process 529
            nucleoside triphosphate metabolic process 261
              pyrimidine nucleoside triphosphate metabolic process 24
                pyrimidine ribonucleoside triphosphate metabolic process 17
                  CTP metabolic process + 15
                  TTP metabolic process + 0
                  UTP metabolic process + 11
                  pyrimidine ribonucleoside triphosphate biosynthetic process + 14
                  pyrimidine ribonucleoside triphosphate catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      cellular metabolic process 9697
        cellular nitrogen compound metabolic process 6417
          nucleobase-containing compound metabolic process 5335
            nucleobase-containing small molecule metabolic process 593
              nucleoside phosphate metabolic process 529
                nucleoside triphosphate metabolic process 261
                  ribonucleoside triphosphate metabolic process 242
                    pyrimidine ribonucleoside triphosphate metabolic process 17
                      CTP metabolic process + 15
                      TTP metabolic process + 0
                      UTP metabolic process + 11
                      pyrimidine ribonucleoside triphosphate biosynthetic process + 14
                      pyrimidine ribonucleoside triphosphate catabolic process + 1
paths to the root