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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside diphosphate metabolic process
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Accession:GO:0009193 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside diphosphate metabolism


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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA
RGD
Ensembl
PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711
JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chrNW_004936488:3,241,004...3,280,360
Ensembl chrNW_004936488:3,237,772...3,279,947
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Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15031
    metabolic process 9468
      small molecule metabolic process 1518
        nucleobase-containing small molecule metabolic process 473
          nucleoside phosphate metabolic process 417
            nucleoside diphosphate metabolic process 27
              pyrimidine nucleoside diphosphate metabolic process 8
                pyrimidine ribonucleoside diphosphate metabolic process 6
                  CDP metabolic process + 1
                  TDP metabolic process + 0
                  UDP metabolic process + 6
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                  pyrimidine ribonucleoside diphosphate catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 15031
    metabolic process 9468
      cellular metabolic process 7408
        cellular nitrogen compound metabolic process 5029
          nucleobase-containing compound metabolic process 4496
            nucleobase-containing small molecule metabolic process 473
              nucleoside phosphate metabolic process 417
                nucleoside diphosphate metabolic process 27
                  ribonucleoside diphosphate metabolic process 22
                    pyrimidine ribonucleoside diphosphate metabolic process 6
                      CDP metabolic process + 1
                      TDP metabolic process + 0
                      UDP metabolic process + 6
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                      pyrimidine ribonucleoside diphosphate catabolic process + 2
paths to the root