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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside diphosphate metabolic process
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Accession:GO:0009193 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside diphosphate metabolism



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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
RGD
MGI
PMID:3010881 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (MGI:6719483|PMID:25678555) MGI PMID:25678555 MGI:6719483 NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823
JBrowse link
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:6726469|PMID:11912132)
GO_Central
MGI
RGD
PMID:3010881 PMID:11912132 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 MGI:6726469 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IMP (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305
JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IMP
(MGI:1289111|PMID:2419341)
(MGI:6720230|PMID:6154574)
MGI PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:69,574,600...69,604,191
Ensembl chr14:69,574,623...69,604,719
JBrowse link
G Entpd4b ectonucleoside triphosphate diphosphohydrolase 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,792,850...69,822,389
Ensembl chr14:69,792,873...69,822,969
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IDA (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr12:84,420,649...84,455,803
Ensembl chr12:84,420,631...84,455,803
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28454
    metabolic process 11391
      small molecule metabolic process 1863
        nucleobase-containing small molecule metabolic process 578
          nucleoside phosphate metabolic process 518
            nucleoside diphosphate metabolic process 31
              pyrimidine nucleoside diphosphate metabolic process 10
                pyrimidine ribonucleoside diphosphate metabolic process 8
                  CDP metabolic process + 1
                  TDP metabolic process + 0
                  UDP metabolic process + 8
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                  pyrimidine ribonucleoside diphosphate catabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 28454
    metabolic process 11391
      cellular metabolic process 8816
        cellular nitrogen compound metabolic process 6034
          nucleobase-containing compound metabolic process 5330
            nucleobase-containing small molecule metabolic process 578
              nucleoside phosphate metabolic process 518
                nucleoside diphosphate metabolic process 31
                  ribonucleoside diphosphate metabolic process 25
                    pyrimidine ribonucleoside diphosphate metabolic process 8
                      CDP metabolic process + 1
                      TDP metabolic process + 0
                      UDP metabolic process + 8
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                      pyrimidine ribonucleoside diphosphate catabolic process + 4
paths to the root