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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside diphosphate metabolic process
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Accession:GO:0009193 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside diphosphate metabolism



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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:3010881 PMID:21873635 RGD:5133253, RGD:13792537 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) RGD PMID:25678555 NCBI chr 6:25,292,133...25,315,176
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:11912132)
Ensembl
RGD
PMID:11912132 PMID:3010881 PMID:21873635 GO_REF:0000107, RGD:5133253, RGD:13792537 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) RGD PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (MGI:1289111|PMID:2419341), (MGI:6720230|PMID:6154574) RGD PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA
ISO
PMID:21873635
(PMID:10858452), (PMID:9556635)
RGD PMID:9556635 PMID:10858452 PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)
UniProt
RGD
PMID:10369669 PMID:21074248 GO_REF:0000024 MGI:1927266 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20091
    metabolic process 12359
      small molecule metabolic process 1922
        nucleobase-containing small molecule metabolic process 695
          nucleoside phosphate metabolic process 621
            nucleoside diphosphate metabolic process 178
              pyrimidine nucleoside diphosphate metabolic process 9
                pyrimidine ribonucleoside diphosphate metabolic process 7
                  CDP metabolic process + 1
                  TDP metabolic process + 0
                  UDP metabolic process + 7
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                  pyrimidine ribonucleoside diphosphate catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 20091
    metabolic process 12359
      cellular metabolic process 10396
        cellular nitrogen compound metabolic process 6822
          nucleobase-containing compound metabolic process 5780
            nucleobase-containing small molecule metabolic process 695
              nucleoside phosphate metabolic process 621
                nucleoside diphosphate metabolic process 178
                  ribonucleoside diphosphate metabolic process 158
                    pyrimidine ribonucleoside diphosphate metabolic process 7
                      CDP metabolic process + 1
                      TDP metabolic process + 0
                      UDP metabolic process + 7
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
                      pyrimidine ribonucleoside diphosphate catabolic process + 3
paths to the root