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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside diphosphate metabolic process
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Accession:GO:0009193 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside diphosphate metabolism


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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA 		(PMID:25678555)
GO_REF:0000107 		RGD
Ensembl		 PMID:25678555 GO_REF:0000107 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:11912132) 		GO_Central
Ensembl
RGD		 PMID:11912132 PMID:3010881 GO_REF:0000033 GO_REF:0000107, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in ISO (PMID:30449682), (PMID:6249586) RGD PMID:6249586 PMID:30449682 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341), (PMID:6154574) RGD PMID:2419341 PMID:6154574 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA 		(PMID:10858452), (PMID:9556635)
GO_REF:0000033 		RGD
GO_Central		 PMID:9556635 PMID:10858452 GO_REF:0000033 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:10369669), (PMID:21074248)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:10369669 PMID:21074248 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        phosphorus metabolic process 2311
          phosphate-containing compound metabolic process 2308
            nucleoside phosphate metabolic process 699
              nucleoside diphosphate metabolic process 188
                pyrimidine nucleoside diphosphate metabolic process 10
                  pyrimidine ribonucleoside diphosphate metabolic process 8
                    CDP metabolic process + 2
                    TDP metabolic process + 0
                    UDP metabolic process + 8
                    pyrimidine ribonucleoside diphosphate biosynthetic process + 5
                    pyrimidine ribonucleoside diphosphate catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 730
              nucleoside phosphate metabolic process 699
                nucleoside diphosphate metabolic process 188
                  ribonucleoside diphosphate metabolic process 183
                    pyrimidine ribonucleoside diphosphate metabolic process 8
                      CDP metabolic process + 2
                      TDP metabolic process + 0
                      UDP metabolic process + 8
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 5
                      pyrimidine ribonucleoside diphosphate catabolic process + 3
paths to the root