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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoside diphosphate catabolic process
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Accession:GO:0009191 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate breakdown;   ribonucleoside diphosphate catabolism;   ribonucleoside diphosphate degradation



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ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISS
ISO
GO_REF:0000024
(PMID:18462755), (PMID:19699693), (PMID:21389046)
UniProt
RGD
PMID:18462755 PMID:19699693 PMID:21389046 GO_REF:0000024 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) RGD PMID:28746349 MGI:5917829 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO MGI:2182811 (MGI:3760051|PMID:17502665) RGD PMID:17502665 MGI:3760051 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IEA
ISO
GO_REF:0000107
MGI:3522017 (MGI:5917829|PMID:28746349), (MGI:6478084|PMID:20430891)
Ensembl
RGD
PMID:20430891 PMID:28746349 GO_REF:0000107 MGI:5917829 MGI:6478084 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998
JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142
JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:2178511 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2178511|PMID:11929769)
Ensembl
RGD
PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA
ISO
PMID:21873635
(PMID:10858452), (PMID:9556635)
RGD PMID:9556635 PMID:10858452 PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)
UniProt
RGD
PMID:10369669 PMID:21074248 GO_REF:0000024 MGI:1927266 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19903
    metabolic process 12212
      organic substance metabolic process 11753
        organophosphate metabolic process 1045
          nucleoside phosphate metabolic process 624
            nucleoside diphosphate metabolic process 182
              nucleoside diphosphate catabolic process 14
                ribonucleoside diphosphate catabolic process 11
                  purine ribonucleoside diphosphate catabolic process + 8
                  pyrimidine ribonucleoside diphosphate catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 19903
    metabolic process 12212
      cellular metabolic process 9633
        cellular aromatic compound metabolic process 6002
          nucleobase-containing compound metabolic process 5769
            nucleobase-containing small molecule metabolic process 698
              nucleoside phosphate metabolic process 624
                nucleoside diphosphate metabolic process 182
                  nucleoside diphosphate catabolic process 14
                    ribonucleoside diphosphate catabolic process 11
                      purine ribonucleoside diphosphate catabolic process + 8
                      pyrimidine ribonucleoside diphosphate catabolic process + 3
paths to the root