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ONTOLOGY REPORT - ANNOTATIONS


Term:cyclic nucleotide biosynthetic process
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Accession:GO:0009190 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
Synonyms:exact_synonym: cyclic nucleotide anabolism;   cyclic nucleotide biosynthesis;   cyclic nucleotide formation;   cyclic nucleotide synthesis



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cAMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:14985420 GO_REF:0000033, RGD:2312640 NCBI chr14:86,125,119...86,234,459
Ensembl chr14:81,911,099...82,028,969
JBrowse link
G Adcy10 adenylate cyclase 10 involved_in IDA
ISO
IMP
(PMID:12609998), (PMID:15659711) RGD PMID:12609998 PMID:15659711 PMID:9874775 PMID:7225326 PMID:16627466 More... RGD:1299450, RGD:2313177, RGD:2313173, RGD:2313171 NCBI chr13:80,280,595...80,366,939
Ensembl chr13:77,768,468...77,833,951
JBrowse link
G Adcy2 adenylate cyclase 2 involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000117
PMID:18164588
PMID:10427002
GO_Central
UniProt
RGD
PMID:11738086 PMID:18164588 PMID:10427002 PMID:12711600 GO_REF:0000033 GO_REF:0000117, RGD:2312641, RGD:8553431, RGD:10400857, RGD:2312674 NCBI chr 1:36,204,054...36,650,645
Ensembl chr 1:34,375,895...34,822,236
JBrowse link
G Adcy3 adenylate cyclase 3 involved_in IDA
ISO
IBA
IEA
(PMID:11055432)
GO_REF:0000033
GO_REF:0000117
PMID:24363043
RGD
GO_Central
UniProt
PMID:11055432 PMID:12711600 PMID:24363043 GO_REF:0000033 GO_REF:0000117, RGD:2312674, RGD:10400870 NCBI chr 6:32,819,602...32,923,174
Ensembl chr 6:27,124,828...27,203,686
JBrowse link
G Adcy4 adenylate cyclase 4 involved_in IDA
IEA
IBA
PMID:8900209
GO_REF:0000117
GO_REF:0000033
UniProt
GO_Central
RGD
PMID:11738086 PMID:12711600 PMID:8900209 GO_REF:0000033 GO_REF:0000117, RGD:2312641, RGD:2312674, RGD:8554340 NCBI chr15:33,236,201...33,252,070
Ensembl chr15:29,266,287...29,282,108
JBrowse link
G Adcy5 adenylate cyclase 5 involved_in IDA
ISO
IEA
(PMID:8119955), (PMID:9748257)
GO_REF:0000117
(PMID:15385642), (PMID:24700542), (PMID:24740569)
RGD
UniProt
PMID:8119955 PMID:9748257 PMID:15385642 PMID:24700542 PMID:24740569 More... GO_REF:0000117, RGD:2312641, RGD:2315006, RGD:2312674 NCBI chr11:78,976,861...79,123,343
Ensembl chr11:65,471,612...65,618,974
JBrowse link
G Adcy6 adenylate cyclase 6 involved_in IDA
IMP
ISO
IEA
(PMID:17916776), (PMID:18403039)
GO_REF:0000117
(PMID:8119955)
(PMID:20466003)
RGD
UniProt
PMID:8119955 PMID:17916776 PMID:18403039 PMID:20466003 PMID:15961389 More... GO_REF:0000117, RGD:1598749, RGD:2312641, RGD:2312654, RGD:2312678, RGD:2312674, RGD:2313211, RGD:2315006 NCBI chr 7:131,621,860...131,642,923
Ensembl chr 7:129,742,838...129,763,754
JBrowse link
G Adcy7 adenylate cyclase 7 involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:11113152), (PMID:17760784)
GO_Central
RGD
PMID:11113152 PMID:17760784 PMID:12711600 GO_REF:0000033, RGD:2312674 NCBI chr19:34,913,154...34,972,366
Ensembl chr19:18,740,875...18,776,311
JBrowse link
G Adcy8 adenylate cyclase 8 involved_in IMP
IEA
IBA
GO_REF:0000117
GO_REF:0000033
UniProt
GO_Central
RGD
PMID:16741924 PMID:19444869 PMID:19305019 GO_REF:0000033 GO_REF:0000117, RGD:2312769, RGD:2312785, RGD:7241269 NCBI chr 7:98,306,434...98,555,687
Ensembl chr 7:96,417,324...96,665,911
JBrowse link
G Adcy9 adenylate cyclase 9 acts_upstream_of_or_within
involved_in
IMP
ISO
(PMID:7575502), (PMID:8662814)
(PMID:10987815), (PMID:9628827)
RGD PMID:7575502 PMID:8662814 PMID:9628827 PMID:10987815 PMID:19444869 RGD:2312785 NCBI chr10:11,645,373...11,768,462
Ensembl chr10:11,139,446...11,262,066
JBrowse link
G Ntsr1 neurotensin receptor 1 IMP RGD PMID:12869647 RGD:596992334 NCBI chr 3:187,983,778...188,033,934
Ensembl chr 3:167,606,215...167,656,377
JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:11278900 RGD:10003101 NCBI chr 2:249,264,985...249,409,966
Ensembl chr 2:246,606,183...246,684,434
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:11278900 RGD:10003101 NCBI chr 2:56,061,699...56,074,594
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
cGMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:23505436)
GO_REF:0000033
MGI:3640802 (PMID:16614755)
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:16614755 PMID:23505436 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:169,716,684...169,780,360
Ensembl chr 2:167,418,640...167,481,671
JBrowse link
G Gucy1a2 guanylate cyclase 1 soluble subunit alpha 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:8,785,212...9,174,322
Ensembl chr 8:500,212...889,203
JBrowse link
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 involved_in ISO
IBA
(PMID:23505436)
GO_REF:0000033
RGD
GO_Central
PMID:23505436 GO_REF:0000033 NCBI chr 2:169,646,897...169,697,060
Ensembl chr 2:167,348,825...167,398,916
JBrowse link
G Gucy1b2 guanylate cyclase 1 soluble subunit beta 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:36,589,501...36,669,441
Ensembl chr15:36,598,883...36,669,441
JBrowse link
G Gucy2c guanylate cyclase 2C involved_in IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr 4:171,299,715...171,380,296
Ensembl chr 4:169,568,529...169,649,092
JBrowse link
G Gucy2d guanylate cyclase 2D involved_in IDA
IEA
IBA
PMID:11580282
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
PMID:11580282 GO_REF:0000033 GO_REF:0000043, RGD:15023466 NCBI chr 1:162,150,967...162,185,666
Ensembl chr 1:152,739,775...152,774,473
JBrowse link
G Gucy2e guanylate cyclase 2E involved_in IEA
ISO
IBA
GO_REF:0000107
(PMID:21598940)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:21598940 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,453,753...54,478,639
Ensembl chr10:53,959,010...53,974,067
JBrowse link
G Gucy2f guanylate cyclase 2F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:110,507,183...110,605,017
Ensembl chr  X:105,710,356...105,808,183
JBrowse link
G Gucy2g guanylate cyclase 2G involved_in IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr 1:264,241,830...264,285,615
Ensembl chr 1:254,239,174...254,280,277
JBrowse link
G Nppa natriuretic peptide A acts_upstream_of
involved_in
ISO
IMP
IEA
IBA
(PMID:1672777)
GO_REF:0000107
GO_REF:0000033
RGD
Ensembl
GO_Central
PMID:1672777 PMID:10559136 GO_REF:0000033 GO_REF:0000107, RGD:619660 NCBI chr 5:163,712,184...163,713,493
Ensembl chr 5:158,429,042...158,430,351
JBrowse link
G Nppb natriuretic peptide B acts_upstream_of
involved_in
ISO
IBA
(PMID:1672777)
GO_REF:0000033
RGD
GO_Central
PMID:1672777 GO_REF:0000033 NCBI chr 5:163,699,955...163,701,314
Ensembl chr 5:158,416,866...158,418,168
JBrowse link
G Nppc natriuretic peptide C acts_upstream_of
involved_in
ISO
IBA
(PMID:1672777)
GO_REF:0000033
(PMID:11259675)
RGD
GO_Central
PMID:1672777 PMID:11259675 GO_REF:0000033 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:87,320,051...87,324,251
JBrowse link
G Npr1 natriuretic peptide receptor 1 involved_in ISO
IEA
IBA
(PMID:1672777)
GO_REF:0000043
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:1672777 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:178,231,766...178,247,591
Ensembl chr 2:175,934,181...175,949,505
JBrowse link
G Npr2 natriuretic peptide receptor 2 acts_upstream_of
involved_in
ISO
IEA
IBA
(PMID:1672777)
GO_REF:0000043
GO_REF:0000107
GO_REF:0000033
RGD
UniProt
Ensembl
GO_Central
PMID:1672777 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:57,883,171...57,901,580
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        biosynthetic process 8651
          nucleobase-containing compound biosynthetic process 4857
            nucleoside phosphate biosynthetic process 305
              nucleotide biosynthetic process 224
                cyclic nucleotide biosynthetic process 27
                  3',5'-cyclic diguanylic acid metabolic process 0
                  cAMP biosynthetic process 13
                  cGMP biosynthetic process 14
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        primary metabolic process 10746
          nucleobase-containing compound metabolic process 5944
            nucleobase-containing small molecule metabolic process 729
              nucleoside phosphate metabolic process 694
                nucleotide metabolic process 540
                  cyclic nucleotide metabolic process 46
                    cyclic nucleotide biosynthetic process 27
                      3',5'-cyclic diguanylic acid metabolic process 0
                      cAMP biosynthetic process 13
                      cGMP biosynthetic process 14
paths to the root