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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate biosynthetic process
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Accession:GO:0009188 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate anabolism;   ribonucleoside diphosphate biosynthesis;   ribonucleoside diphosphate formation;   ribonucleoside diphosphate synthesis


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ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO
ISS		 (PMID:24767988)
GO_REF:0000024		 RGD
UniProt		 PMID:24767988 GO_REF:0000024 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:19049516 GO_REF:0000104, RGD:5134369 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
G Ak2 adenylate kinase 2 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:5123889 GO_REF:0000104, RGD:5490208 NCBI chr 5:141,308,650...141,364,633
Ensembl chr 5:141,346,063...141,364,632 		JBrowse link
G Ak2l1 adenylate kinase 2 like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:44,966,606...44,967,403
Ensembl chr 4:44,966,627...44,967,325 		JBrowse link
G Ak3 adenylate kinase 3 involved_in IDA
IEA		 GO_REF:0000104 UniProt
RGD		 PMID:5123889 PMID:5010295 GO_REF:0000104, RGD:5490208, RGD:5490216 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625 		JBrowse link
G Ak4 adenylate kinase 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:116,039,222...116,099,064
Ensembl chr 5:116,039,616...116,098,618 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:3010881 GO_REF:0000033 GO_REF:0000118, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) RGD PMID:25678555 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(PMID:11912132)		 GO_Central
TreeGrafter
Ensembl
RGD		 PMID:11912132 PMID:3010881 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA
ISO		 GO_REF:0000107
(PMID:30449682), (PMID:6249586)		 Ensembl
RGD		 PMID:6249586 PMID:30449682 GO_REF:0000107 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:2419341), (PMID:6154574) RGD PMID:2419341 PMID:6154574 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        organophosphate metabolic process 1062
          nucleoside phosphate metabolic process 633
            nucleoside diphosphate metabolic process 184
              nucleoside diphosphate biosynthetic process 13
                ribonucleoside diphosphate biosynthetic process 10
                  purine ribonucleoside diphosphate biosynthetic process + 6
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      cellular metabolic process 10279
        cellular aromatic compound metabolic process 5937
          nucleobase-containing compound metabolic process 5696
            nucleobase-containing small molecule metabolic process 707
              nucleoside phosphate metabolic process 633
                nucleoside diphosphate metabolic process 184
                  nucleoside diphosphate biosynthetic process 13
                    ribonucleoside diphosphate biosynthetic process 10
                      purine ribonucleoside diphosphate biosynthetic process + 6
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
paths to the root