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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate metabolic process
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Accession:GO:0009185 term browser browse the term
Definition:The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate metabolism

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ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:815,401...848,749
Ensembl chrNW_004936498:815,399...848,793 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO (PMID:16376858)
(MGI:6810812|PMID:12578384)		 ComplexPortal PMID:12578384 PMID:16376858 MGI:6810812 NCBI chrNW_004936532:6,348,041...6,390,144 JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,354,387...41,401,308
Ensembl chrNW_004936470:41,354,287...41,401,317 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chrNW_004936487:15,507,663...15,517,401
Ensembl chrNW_004936487:15,507,498...15,517,469 		JBrowse link
G Ak2 adenylate kinase 2 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chrNW_004936474:15,887,014...15,908,522 JBrowse link
G Ak3 adenylate kinase 3 involved_in ISO
IEA		 RGD
UniProt		 PMID:5010295 PMID:5123889 GO_REF:0000104 RGD:5490208 RGD:5490216 NCBI chrNW_004936503:497,391...517,011
Ensembl chrNW_004936503:496,965...516,888 		JBrowse link
G Ak4 adenylate kinase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004936528:7,847,156...7,891,585
Ensembl chrNW_004936528:7,848,096...7,890,627 		JBrowse link
G Nt5e 5'-nucleotidase ecto involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:5,797,218...5,846,118
Ensembl chrNW_004936510:5,797,212...5,846,124 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chrNW_004936905:586,160...616,490
Ensembl chrNW_004936905:584,558...616,508 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:5529149|PMID:23078545)
(MGI:5476853|PMID:23439682)		 CACAO
MGI		 PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149 NCBI chrNW_004936528:7,847,156...7,891,585
Ensembl chrNW_004936528:7,848,096...7,890,627 		JBrowse link
G Bad BCL2 associated agonist of cell death involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,924,349...4,933,683
Ensembl chrNW_004936599:4,924,789...4,933,368 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:81565|PMID:8663313) GOC
GOC		 PMID:8663313 GO_REF:0000108 MGI:81565 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chrNW_004936905:586,160...616,490
Ensembl chrNW_004936905:584,558...616,508 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178511|PMID:11929769) MGI
Ensembl		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chrNW_004936669:901,192...906,765
Ensembl chrNW_004936669:901,104...906,782 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:3,148,955...3,169,527
Ensembl chrNW_004936484:3,156,586...3,169,146 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chrNW_004936488:3,241,004...3,280,360
Ensembl chrNW_004936488:3,237,772...3,279,947 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15022
    metabolic process 9415
      organic substance metabolic process 9049
        organophosphate metabolic process 794
          nucleoside phosphate metabolic process 412
            nucleoside diphosphate metabolic process 26
              ribonucleoside diphosphate metabolic process 21
                purine ribonucleoside diphosphate metabolic process + 12
                pyrimidine ribonucleoside diphosphate metabolic process + 6
                ribonucleoside diphosphate biosynthetic process + 9
                ribonucleoside diphosphate catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 15022
    metabolic process 9415
      nitrogen compound metabolic process 6544
        cellular nitrogen compound metabolic process 2922
          nucleobase-containing compound metabolic process 2259
            nucleobase-containing small molecule metabolic process 466
              nucleoside phosphate metabolic process 412
                nucleoside diphosphate metabolic process 26
                  ribonucleoside diphosphate metabolic process 21
                    purine ribonucleoside diphosphate metabolic process + 12
                    pyrimidine ribonucleoside diphosphate metabolic process + 6
                    ribonucleoside diphosphate biosynthetic process + 9
                    ribonucleoside diphosphate catabolic process + 8
paths to the root