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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate metabolic process
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Accession:GO:0009185 term browser browse the term
Definition:The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate metabolism


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ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase M1 involved_in ISO
IDA		 (MGI:6810812|PMID:12578384) MGI
ComplexPortal		 PMID:12578384 GO_REF:0000096 MGI:4834177 MGI:6810812 NCBI chr 7:102,090,902...102,118,978
Ensembl chr 7:102,090,902...102,118,978 		JBrowse link
G Rrm2 ribonucleotide reductase M2 involved_in ISO
IDA		 (MGI:6810812|PMID:12578384) MGI
ComplexPortal		 PMID:12578384 GO_REF:0000096 MGI:4834177 MGI:6810812 NCBI chr12:24,758,253...24,764,145
Ensembl chr12:24,758,240...24,764,145 		JBrowse link
G Rrm2b ribonucleotide reductase M2 B (TP53 inducible) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:37,924,196...37,961,562
Ensembl chr15:37,924,196...37,961,562 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in ISO RGD
MGI		 PMID:19049516 GO_REF:0000096 MGI:4417868 RGD:5134369 NCBI chr 2:32,511,770...32,525,070
Ensembl chr 2:32,511,770...32,525,070 		JBrowse link
G Ak2 adenylate kinase 2 involved_in ISO RGD
MGI		 PMID:5123889 GO_REF:0000096 MGI:4417868 RGD:5490208 NCBI chr 4:128,887,017...128,905,322
Ensembl chr 4:128,885,751...128,905,322 		JBrowse link
G Ak3 adenylate kinase 3 involved_in ISO RGD
MGI		 PMID:5010295 PMID:5123889 GO_REF:0000096 MGI:4417868 RGD:5490208 RGD:5490216 NCBI chr19:28,968,715...29,026,122
Ensembl chr19:28,998,233...29,025,361 		JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in IMP (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chr 7:110,367,291...110,411,612
Ensembl chr 7:110,367,413...110,411,612 		JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in IMP (MGI:3760051|PMID:17502665) MGI PMID:17502665 MGI:3760051 NCBI chr19:40,600,810...40,730,046
Ensembl chr19:40,600,810...40,730,046 		JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IMP (MGI:5917829|PMID:28746349)
(MGI:6478084|PMID:20430891)		 MGI PMID:20430891 PMID:28746349 MGI:5917829 MGI:6478084 NCBI chr 9:88,209,662...88,254,142
Ensembl chr 9:88,209,250...88,254,145 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within IDA (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chr 5:104,193,407...104,213,244
Ensembl chr 5:104,194,172...104,213,245 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 acts_upstream_of_or_within
involved_in		 IMP (MGI:5476853|PMID:23439682)
(MGI:5529149|PMID:23078545)		 MGI
CACAO		 PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149 NCBI chr 7:110,367,291...110,411,612
Ensembl chr 7:110,367,413...110,411,612 		JBrowse link
G Bad BCL2-associated agonist of cell death involved_in IMP (MGI:3778846|PMID:18223655) UniProt PMID:18223655 MGI:3778846 NCBI chr19:6,919,229...6,929,273
Ensembl chr19:6,919,229...6,929,267 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:3010881 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in ISO RGD
MGI		 PMID:4307347 GO_REF:0000096 MGI:4417868 RGD:5147877 NCBI chr11:59,074,696...59,083,068
Ensembl chr11:59,074,701...59,083,069 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,574,600...69,604,191
Ensembl chr14:69,574,623...69,604,719 		JBrowse link
G Entpd4b ectonucleoside triphosphate diphosphohydrolase 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,792,850...69,822,389
Ensembl chr14:69,792,873...69,822,969 		JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:70,815,264...70,820,128
Ensembl chr14:70,815,077...70,820,128 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 acts_upstream_of_or_within IDA (MGI:81565|PMID:8663313) GOC PMID:8663313 MGI:81565 NCBI chr11:59,074,696...59,083,068
Ensembl chr11:59,074,701...59,083,069 		JBrowse link
G Lrguk leucine-rich repeats and guanylate kinase domain containing acts_upstream_of_or_within IBA (MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:6201960 NCBI chr 6:34,006,183...34,110,969
Ensembl chr 6:34,006,379...34,110,969 		JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within IDA (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chr 5:104,193,407...104,213,244
Ensembl chr 5:104,194,172...104,213,245 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within IDA (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chr19:40,600,810...40,730,046
Ensembl chr19:40,600,810...40,730,046 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within IDA (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chr 2:25,285,886...25,291,335
Ensembl chr 2:25,285,886...25,291,333 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:101,273,675...101,324,968
Ensembl chr 4:101,276,474...101,324,192 		JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cant1 calcium activated nucleotidase 1 acts_upstream_of_or_within IC (MGI:2387884|PMID:12167635) MGI PMID:12167635 MGI:2387884 NCBI chr11:118,297,115...118,309,971
Ensembl chr11:118,297,115...118,309,912 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 acts_upstream_of_or_within ISO (MGI:1934730|PMID:11278936) MGI PMID:11278936 MGI:1934730 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136 		JBrowse link
G Nudt5 nudix hydrolase 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:5,849,839...5,875,631
Ensembl chr 2:5,849,830...5,876,706 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (MGI:6719483|PMID:25678555) MGI PMID:25678555 MGI:6719483 NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823 		JBrowse link
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:6726469|PMID:11912132)		 GO_Central
MGI
RGD		 PMID:3010881 PMID:11912132 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 MGI:6726469 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IMP (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IMP		 (MGI:1289111|PMID:2419341)
(MGI:6720230|PMID:6154574)		 MGI PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:69,574,600...69,604,191
Ensembl chr14:69,574,623...69,604,719 		JBrowse link
G Entpd4b ectonucleoside triphosphate diphosphohydrolase 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,792,850...69,822,389
Ensembl chr14:69,792,873...69,822,969 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IDA (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr12:84,420,649...84,455,803
Ensembl chr12:84,420,631...84,455,803 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      organic substance metabolic process 11226
        organophosphate metabolic process 953
          nucleoside phosphate metabolic process 520
            nucleoside diphosphate metabolic process 32
              ribonucleoside diphosphate metabolic process 26
                purine ribonucleoside diphosphate metabolic process + 14
                pyrimidine ribonucleoside diphosphate metabolic process + 8
                ribonucleoside diphosphate biosynthetic process + 9
                ribonucleoside diphosphate catabolic process + 12
Path 2
Term Annotations click to browse term
  biological_process 28775
    metabolic process 11619
      nitrogen compound metabolic process 7844
        cellular nitrogen compound metabolic process 3668
          nucleobase-containing compound metabolic process 2805
            nucleobase-containing small molecule metabolic process 581
              nucleoside phosphate metabolic process 520
                nucleoside diphosphate metabolic process 32
                  ribonucleoside diphosphate metabolic process 26
                    purine ribonucleoside diphosphate metabolic process + 14
                    pyrimidine ribonucleoside diphosphate metabolic process + 8
                    ribonucleoside diphosphate biosynthetic process + 9
                    ribonucleoside diphosphate catabolic process + 12
paths to the root